tag:joss.theoj.org,2005:/papers/tagged/bloom%20filterJournal of Open Source Software2022-11-04T21:27:26ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/37642022-11-04T21:27:26Z2022-11-08T13:57:28Zbtllib: A C++ library with Python interface for efficient genomic sequence processingacceptedv1.4.42022-08-04 01:28:45 UTC792022-11-04 21:27:26 UTC720224720VladimirNikolićCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, Canada0000-0002-2992-9935ParhamKazemiCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, CanadaLaurenCoombeCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0002-7518-2326JohnathanWongCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, CanadaAmirhosseinAfshinfardCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, Canada0000-0002-6875-4939JustinChuCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, CanadaRenéL.WarrenCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0002-9890-2293InançBirolCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0003-0950-783910.21105/joss.04720https://doi.org/10.5281/zenodo.7275416Python, C, Rhttps://joss.theoj.org/papers/10.21105/joss.04720.pdfC++, bioinformatics, algorithms, data structures, genome, bloom filtertag:joss.theoj.org,2005:Paper/2012017-07-03T00:00:00Z2021-02-15T11:34:07Zkhmer release v2.1: software for biological sequence analysisacceptedv2.12017-05-26 00:17:17 UTC152017-07-03 00:00:00 UTC22017272DanielStandageLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis0000-0003-0342-8531AliAliyariIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0003-0925-4886LisaJ.CohenLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Molecular, Cellular, and Integrative Physiology Graduate Group; University of California, Davis0000-0002-3600-7218MichaelR.CrusoeCommon Workflow Language Project0000-0002-2961-9670TimHeadWild Tree Tech0000-0003-0931-3698LuizIrberLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0003-4371-9659ShannonEkJoslinIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-5470-1193N.B.KingsleyIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-8574-8592KevinD.MurrayARC Centre of Excellence in Plant Energy Biology; Australian National University0000-0002-2466-1917RussellNechesMicrobiology Graduate Group; Univerity of California, Davis0000-0002-2055-8381CamilleScottLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0001-8822-8779RyanSheanUniversity of WashingtonSaschaSteinbissDebian Project0000-0002-2151-0574CaitSydneyGoogle, Inc.C.TitusBrownLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Department of Population Health and Reproduction; School of Veterinary Medicine; University of California, Davis0000-0001-6001-267710.21105/joss.00272https://doi.org/10.5281/zenodo.822478Python, C++, Roffhttps://joss.theoj.org/papers/10.21105/joss.00272.pdfbioinformatics, sequence analysis, Bloom filter, Count-Min sketch, de Bruijn graph, assembly, graph traversal, streaming, quality control