tag:joss.theoj.org,2005:/papers/tagged/blast?page=2Journal of Open Source Software2019-12-06T05:25:08ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/12072019-12-06T05:25:08Z2021-02-15T11:31:39Zxrnet: Hierarchical Regularized Regression to Incorporate External Dataaccepted0.0.0.90002019-09-08 03:21:23 UTC442019-12-06 05:25:08 UTC420191761GarrettM.WeaverDepartment of Preventive Medicine, University of Southern California0000-0002-9918-8386JuanPabloLewingerDepartment of Preventive Medicine, University of Southern California10.21105/joss.01761https://doi.org/10.5281/zenodo.3564788R, C++https://joss.theoj.org/papers/10.21105/joss.01761.pdfregularized regression, lasso regression, ridge regression, elastic net regression, hierarchical regressiontag:joss.theoj.org,2005:Paper/6422019-02-06T01:34:10Z2021-02-15T11:32:56Zfibergen: An introductory tool for FFT-based material homogenizationaccepted2018.12018-09-28 15:07:49 UTC342019-02-06 01:34:10 UTC420191027FelixOspaldResearch Group Numerical Mathematics (Partial Differential Equations), Faculty of Mathematics, TU Chemnitz, Chemnitz, Germany0000-0001-8372-917910.21105/joss.01027https://doi.org/10.5281/zenodo.2556861C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01027.pdfmaterial homogenization, FFT, heat equation, Stokes flow, Darcy flow, linear elasticity, hyperelasticitytag:joss.theoj.org,2005:Paper/1142017-02-12T00:00:00Z2021-02-15T11:34:22ZFRIEDA: Flexible Robust Intelligent Elastic Data Management Frameworkacceptedv0.3.02016-11-09 22:47:27 UTC102017-02-12 00:00:00 UTC22017164DevarshiGhoshalLawrence Berkeley National Lab0000-0002-6819-6949ValerieHendrixLawrence Berkeley National Lab0000-0001-9061-8952WilliamFoxLawrence Berkeley National Lab0000-0003-1751-5118SowmyaBalasubhramanianLawrence Berkeley National Lab0000-0003-1312-9092LavanyaRamakrishnanLawrence Berkeley National Lab0000-0003-1761-413210.21105/joss.00164https://doi.org/10.5281/zenodo.1345764Python, Smarty, Puppethttps://joss.theoj.org/papers/10.21105/joss.00164.pdfcomputational science, cloud computing, data management, scientific data management, parallel and distributed systemstag:joss.theoj.org,2005:Paper/1192017-01-28T00:00:00Z2021-02-15T11:34:21Zshmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Pythonacceptedv1.0.22016-11-21 14:25:13 UTC92017-01-28 00:00:00 UTC22017142CamilleScottUniversity of California, Davis0000-0001-8822-877910.21105/joss.00142https://doi.org/10.5281/zenodo.260437Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.00142.pdfbioinformatics, orthology, alignment, LAST, BLAST, pythontag:joss.theoj.org,2005:Paper/1122016-12-05T00:00:00Z2021-02-15T11:34:22ZMultilocus sequence typing by blast from de novo assemblies against PubMLSTacceptedv2.1.16309102016-11-04 11:47:34 UTC82016-12-05 00:00:00 UTC12016118AndrewJ.PagePathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6919-6062BenTaylorPathogen Informatics, Wellcome Trust Sanger InstituteJacquelineA.KeanePathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2021-186310.21105/joss.00118https://doi.org/10.6084/m9.figshare.4285097.v1Perlhttps://joss.theoj.org/papers/10.21105/joss.00118.pdfbioinformatics, MLST, multilocus sequence typing, blast, de novo assembly, bacteria