tag:joss.theoj.org,2005:/papers/tagged/biomedicalJournal of Open Source Software2024-03-17T15:00:35ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50042024-03-17T15:00:35Z2024-03-18T07:46:38ZSelfEEG: A Python library for Self-Supervised Learning in Electroencephalographyacceptedv0.1.02023-12-16 00:30:46 UTC952024-03-17 15:00:35 UTC920246224FedericoDel PupDepartment of Information Engineering, University of Padova, Padova, Italy, Department of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0004-0698-962XAndreaZanolaPadova Neuroscience Center, University of Padova, Padova, Italy0000-0001-6973-8634Louis FabriceTshimangaDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0002-1240-4830Paolo EmilioMazzonPadova Neuroscience Center, University of Padova, Padova, ItalyManfredoAtzoriDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy, Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland0000-0001-5397-206310.21105/joss.06224https://doi.org/10.5281/zenodo.10813095Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.06224.pdfPyTorch, Deep Learning (DL), Self-Supervised Learning (SSL), Contrastive Learning (CL), Electroencephalography (EEG), Biomedical signalstag:joss.theoj.org,2005:Paper/45952024-02-13T21:19:32Z2024-02-14T14:58:01ZMicroTracker.jl: A Julia package for microbot researchacceptedv0.2.22023-07-12 15:17:55 UTC942024-02-13 21:19:32 UTC920245804CoyJ.ZimmermannDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of AmericaKeithB.NeevesDepartments of Bioengineering and Pediatrics, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, United States of AmericaDavidW.m.MarrDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of America10.21105/joss.05804https://doi.org/10.5281/zenodo.10578580Juliahttps://joss.theoj.org/papers/10.21105/joss.05804.pdfmicrobot, tracking, colloids, microrobotics, biomedicaltag:joss.theoj.org,2005:Paper/13992020-02-08T20:33:40Z2021-02-15T11:31:16ZPubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset XML Datasetacceptedv0.2.12019-12-12 02:12:01 UTC462020-02-08 20:33:40 UTC520201979TitipatAchakulvisutUniversity of PennsylvaniaDanielE.AcunaSyracuse UniversityKonradKordingUniversity of Pennsylvania10.21105/joss.01979https://doi.org/10.5281/zenodo.3660006Pythonhttps://joss.theoj.org/papers/10.21105/joss.01979.pdfMEDLINE, PubMed, Biomedical corpus, Natural Language Processingtag:joss.theoj.org,2005:Paper/10782020-01-16T18:52:14Z2021-02-15T11:32:02ZAdeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literatureaccepted0.3.02019-06-25 18:46:30 UTC452020-01-16 18:52:14 UTC520201708AlbertSteppiLaboratory of Systems Pharmacology, Harvard Medical School0000-0001-5871-6245BenjaminM.GyoriLaboratory of Systems Pharmacology, Harvard Medical School0000-0001-9439-5346JohnA.BachmanLaboratory of Systems Pharmacology, Harvard Medical School0000-0001-6095-246610.21105/joss.01708https://doi.org/10.5281/zenodo.3610528Python, JavaScript, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01708.pdfnatural language processing, text mining, named entity disambiguation, acronyms, Acrominetag:joss.theoj.org,2005:Paper/7082019-03-20T17:32:58Z2021-02-15T11:32:51ZmorphMan: Automated manipulation of vascular geometriesacceptedv0.12018-10-25 14:50:54 UTC352019-03-20 17:32:58 UTC420191065HenrikA.KjeldsbergDepartment of Computational Physiology, Simula Research LaboratoryAslakW.BergersenDepartment of Computational Physiology, Simula Research Laboratory0000-0001-5063-3680KristianValen-SendstadDepartment of Computational Physiology, Simula Research Laboratory0000-0002-2907-017110.21105/joss.01065https://doi.org/10.5281/zenodo.2591725PowerShell, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01065.pdfgeometric-algorithms, morphology, vascular, biomedicaltag:joss.theoj.org,2005:Paper/9022019-02-27T14:11:27Z2020-03-14T00:51:56Ztacmagic: Positron emission tomography analysis in Racceptedv0.2.02019-02-26 12:47:38 UTC342019-02-27 14:11:27 UTC420191281EricE.BrownDepartment of Psychiatry and Institute of Medical Science, University of Toronto, Toronto, Canada, Centre for Addiction and Mental Health, Toronto, Canada0000-0002-1575-260610.21105/joss.01281https://doi.org/10.5281/zenodo.2577947Rhttps://joss.theoj.org/papers/10.21105/joss.01281.pdfpositron emission tomography, biomedical imaging, neuroimaging, neuroscience, neuroinformaticstag:joss.theoj.org,2005:Paper/2172017-09-05T00:00:00Z2021-02-15T11:34:04ZACEInhibPKPD: An open-source MATLAB app for a pharmacokinetic/pharmacodynamic model of ACE inhibitionacceptedv1.02017-06-15 23:24:44 UTC172017-09-05 00:00:00 UTC22017340AshleeN. FordVersyptSchool of Chemical Engineering, Oklahoma State University0000-0001-9059-5703GraceK.HarrellSchool of Chemical Engineering, Oklahoma State UniversityAlexandraN.McPeakSchool of Chemical Engineering, Oklahoma State University10.21105/joss.00340https://doi.org/10.5281/zenodo.885362Matlabhttps://joss.theoj.org/papers/10.21105/joss.00340.pdfpharmacology, biomedical engineering, mathematical model, MATLAB