tag:joss.theoj.org,2005:/papers/tagged/biomarkersJournal of Open Source Software2023-10-05T09:52:45ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44392023-10-05T09:52:45Z2023-10-06T00:01:05ZNORDic: a Network-Oriented package for the Repurposing of Drugsacceptedv2.4.22023-04-18 11:32:05 UTC902023-10-05 09:52:45 UTC820235532ClémenceRédaUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France0000-0003-3238-0258AndréeDelahaye-DuriezUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France, Université Sorbonne Paris Nord, UFR de santé, médecine et biologie humaine, F-93000 Bobigny, France, Unité fonctionnelle de médecine génomique et génétique clinique, Hôpital Jean Verdier, AP-HP, F-93140 Bondy, France0000-0003-4324-737210.21105/joss.05532https://doi.org/10.5281/zenodo.8355529Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05532.pdfnetwork analysis, boolean network, network inference, biomarker identification, drug repurposingtag:joss.theoj.org,2005:Paper/19182020-09-26T12:21:02Z2021-02-15T11:30:12Zemba: R package for analysis and visualization of biomarkers in boolean model ensemblesacceptedv0.1.62020-07-28 19:45:33 UTC532020-09-26 12:21:02 UTC520202583JohnZobolasDepartment of Biology, Norwegian University of Science and Technology (NTNU), Trondheim, Norway, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0002-3609-8674MartinKuiperDepartment of Biology, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0002-1171-9876ÅsmundFlobakDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway, The Cancer Clinic, St. Olav’s Hospital, Trondheim, Norway0000-0002-3357-425X10.21105/joss.02583https://doi.org/10.5281/zenodo.4043085Rhttps://joss.theoj.org/papers/10.21105/joss.02583.pdfboolean networks, logical modeling, biomarkers, mechanistic models, drug synergies, anti-cancer drug combinations, druglogicstag:joss.theoj.org,2005:Paper/17612020-08-21T10:04:28Z2021-02-15T11:30:26ZSit2StandPy: An Open-Source Python Package for Detecting and Quantifying Sit-to-Stand Transitions Using an Accelerometer on the Lower Backacceptedv1.0.02020-06-23 17:12:01 UTC522020-08-21 10:04:28 UTC520202449LukasAdamowiczPfizer, Inc. 610 Main Street, Cambridge MA, USA 02139ShyamalPatelPfizer, Inc. 610 Main Street, Cambridge MA, USA 0213910.21105/joss.02449https://doi.org/10.5281/zenodo.3988351Pythonhttps://joss.theoj.org/papers/10.21105/joss.02449.pdfBiomechanics, Digital Biomarkers, Digital Medicine, Accelerometer, Inertial Sensors, Wearable Sensors, Human Motion, Activity Recognitiontag:joss.theoj.org,2005:Paper/1402017-07-26T00:00:00Z2021-02-15T11:34:18Zbiotmle: Targeted Learning for Biomarker Discoveryacceptedv0.1.02017-01-09 01:39:57 UTC152017-07-26 00:00:00 UTC22017295NimaS.HejaziDivision of Biostatistics, University of California, Berkeley0000-0002-7127-2789WeixinCaiDivision of Biostatistics, University of California, Berkeley0000-0003-2680-3066AlanE.HubbardDivision of Biostatistics, University of California, Berkeley0000-0002-3769-012710.21105/joss.00295https://doi.org/10.5281/zenodo.834849Rhttps://joss.theoj.org/papers/10.21105/joss.00295.pdftargeted learning, variable importance, causal inference, bioinformatics, genomics