tag:joss.theoj.org,2005:/papers/tagged/bioengineeringJournal of Open Source Software2021-08-22T19:59:26ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/27392021-08-22T19:59:26Z2021-08-23T02:13:38ZOSTIR: open source translation initiation rate predictionacceptedv1.0.42021-06-08 03:04:25 UTC642021-08-22 19:59:26 UTC620213362CameronT.RootsDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin0000-0001-6219-3168AlexandraLukasiewiczMcKetta Department of Chemical Engineering, The University of Texas at AustinJeffreyE.BarrickDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin0000-0003-0888-735810.21105/joss.03362https://doi.org/10.5281/zenodo.5227845R, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03362.pdfsynthetic biology, systems biology, bioengineering, ribosome binding site, translation, calculatortag:joss.theoj.org,2005:Paper/3202018-02-19T17:09:41Z2021-02-15T11:33:47ZGIBBON: The Geometry and Image-Based Bioengineering add-Onacceptedv2.5.02017-11-30 20:17:31 UTC222018-02-19 17:09:41 UTC32018506KevinM.MoermanMassachusetts Institute of Technology0000-0003-3768-426910.21105/joss.00506https://doi.org/10.5281/zenodo.1175348Matlab, C++, Luahttps://joss.theoj.org/papers/10.21105/joss.00506.pdfComputational mechanics, Biomechanics, Finite Element Analysis, Image-Based modeling, Visualization, Meshing