tag:joss.theoj.org,2005:/papers/tagged/big%20dataJournal of Open Source Software2024-02-28T01:15:09ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48402024-02-28T01:15:09Z2024-02-29T00:01:19Zscida: scalable analysis for scientific big dataacceptedv0.2.32023-10-09 11:11:58 UTC942024-02-28 01:15:09 UTC920246064ChrisByrohlHeidelberg University, Institute for Theoretical Astronomy, Albert-Ueberle-Str. 2, 69120 Heideberg, Germany0000-0002-0885-8090DylanNelsonHeidelberg University, Institute for Theoretical Astronomy, Albert-Ueberle-Str. 2, 69120 Heideberg, Germany0000-0001-8421-589010.21105/joss.06064https://doi.org/10.5281/zenodo.10681463Pythonhttps://joss.theoj.org/papers/10.21105/joss.06064.pdfsimulations, i/o, point cloudstag:joss.theoj.org,2005:Paper/47752024-02-23T15:40:17Z2024-02-24T00:03:16Zstemflow: A Python Package for Adaptive Spatio-Temporal Exploratory Modelacceptedv1.0.02023-09-21 07:39:41 UTC942024-02-23 15:40:17 UTC920246158YangkangChenKey Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, ChinaZhongruGuKey Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, Cardiff University-Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing, ChinaXiangjiangZhanKey Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, China, Cardiff University-Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing, China, Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China10.21105/joss.06158https://doi.org/10.6084/m9.figshare.24669132Pythonhttps://joss.theoj.org/papers/10.21105/joss.06158.pdfecology, spatio-temporal big data, citizen science, modeling, seasonal migrationtag:joss.theoj.org,2005:Paper/45282023-12-04T10:49:39Z2023-12-05T00:00:59ZBidsme: expandable BIDS-ifier of brain imagery datasetsaccepted1.4.0.post42023-06-06 14:11:38 UTC922023-12-04 10:49:39 UTC820235575NikitaBeliyGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0009-0002-0830-3279CamilleGuilleminGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-5377-7417EmelinePommierTélécom Physique Strasbourg, Université de Strasbourg, FranceGrégoryHammadGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0003-1083-3869ChristophePhillipsGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-4990-425X10.21105/joss.05575https://doi.org/10.5281/zenodo.10185300Pythonhttps://joss.theoj.org/papers/10.21105/joss.05575.pdfBIDS, data management, standardizationtag:joss.theoj.org,2005:Paper/34202022-12-08T21:58:29Z2022-12-09T03:31:51ZPyNM: a Lightweight Python implementation of Normative Modelingaccepted1.0.0b12022-03-11 18:20:42 UTC802022-12-08 21:58:29 UTC720224321AnnabelleHarveyCentre de Recherche de l’Institut Universitaire de Gériatrie de Montréal, Université de Montréal, QC, Canada, Centre de Recherche du CHU Sainte-Justine, Université de Montréal, QC, Canada0000-0002-9940-8799GuillaumeDumasCentre de Recherche du CHU Sainte-Justine, Université de Montréal, QC, Canada, Mila - Quebec AI Institute, Université de Montréal, QC, Canada0000-0002-2253-184410.21105/joss.04321https://doi.org/10.5281/zenodo.7396721Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04321.pdfNormative Modeling, Heterogeneity, Heteroskedasticity, Big Data, Centiles, LOESS, Gaussian Process, Stochastic Variational Gaussian Process, GAMLSS, Computational Psychiatry, Neurosciencetag:joss.theoj.org,2005:Paper/24282022-04-26T11:09:34Z2022-04-27T07:09:58ZTUM Open Infra Platform: an open source package for simultaneous viewing and analysis of digital models in the civil engineering domainaccepted[still a moving target]2021-02-23 10:24:28 UTC722022-04-26 11:09:34 UTC720223061ŠtefanJaudChair for Computational Modeling and Simulation, Technical University of Munich0000-0003-0387-3440HelgeHechtChair for Computational Modeling and Simulation, Technical University of Munich0000-0001-6744-996XJonasSchlengerChair for Computational Modeling and Simulation, Technical University of Munich0000-0002-4875-5117JulianAmannChair for Computational Modeling and Simulation, Technical University of Munich10.21105/joss.03061https://doi.org/10.5281/zenodo.6488493C++, C, Smalltalkhttps://joss.theoj.org/papers/10.21105/joss.03061.pdfbuilding information modelling (BIM), industry foundation classes (IFC), point cloud data (PCD), EXPRESS parser, code generationtag:joss.theoj.org,2005:Paper/32412022-03-03T18:45:08Z2022-03-04T00:01:09ZTransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualizationacceptedv0.2.72021-12-09 11:12:49 UTC712022-03-03 18:45:08 UTC720224021QingYuKey Laboratory of Road and Traffic Engineering of the Ministry of Education, Tongji University, 4800 Cao’an Road, Shanghai 201804, People’s Republic of China0000-0003-2513-2969JianYuanKey Laboratory of Road and Traffic Engineering of the Ministry of Education, Tongji University, 4800 Cao’an Road, Shanghai 201804, People’s Republic of China0000-0002-7202-094610.21105/joss.04021https://doi.org/10.5281/zenodo.6236507Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04021.pdftransportation, spatio-temporal data, geospatial data, GIS, data quality analysis, data pre-processing, data visualization, taxi GPS data, bus GPS data, bike sharing datatag:joss.theoj.org,2005:Paper/18062021-06-17T17:15:49Z2021-06-18T00:02:28ZScience Capsule - Capturing the Data Life Cycleacceptedv0.1.02020-06-28 03:20:05 UTC622021-06-17 17:15:49 UTC620212484DevarshiGhoshalLawrence Berkeley National Lab0000-0002-6819-6949LudovicoBianchiLawrence Berkeley National Lab0000-0002-0527-1534AbdelilahEssiariLawrence Berkeley National LabMichaelBeachLawrence Berkeley National Lab, University of WashingtonDrewPaineLawrence Berkeley National Lab0000-0003-0711-9744LavanyaRamakrishnanLawrence Berkeley National Lab0000-0003-1761-413210.21105/joss.02484https://doi.org/10.5281/zenodo.4968576Groovy, Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.02484.pdfreproducibility, scientific workflows, data management, high performance computing, big data analyticstag:joss.theoj.org,2005:Paper/26132021-05-09T13:10:32Z2021-05-10T00:02:04ZOpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases.acceptedv0.8.82021-04-30 20:33:10 UTC612021-05-09 13:10:32 UTC620213249NhatC.TranDepartment of Computer Science and Engineering, The University of Texas at Arlington0000-0002-2575-9633JeanX.GaoDepartment of Computer Science and Engineering, The University of Texas at Arlington10.21105/joss.03249https://doi.org/10.5281/zenodo.4731011Pythonhttps://joss.theoj.org/papers/10.21105/joss.03249.pdfbioinformatics, multiomics, data integration, big datatag:joss.theoj.org,2005:Paper/20812021-03-02T15:39:33Z2021-03-03T00:01:37Zclimpred: Verification of weather and climate forecastsacceptedv2.1.12020-10-16 18:17:56 UTC592021-03-02 15:39:33 UTC620212781RileyX.BradyDepartment of Atmospheric and Oceanic Sciences and Institute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, Colorado USA0000-0002-2309-8245AaronSpringMax Planck Institute for Meteorology, Hamburg, Germany, International Max Planck Research School on Earth System Modelling, Hamburg, Germany0000-0003-0216-224110.21105/joss.02781https://doi.org/10.5281/zenodo.4556086Pythonhttps://joss.theoj.org/papers/10.21105/joss.02781.pdfpython, climate, forecasting, geospatial, big datatag:joss.theoj.org,2005:Paper/17072020-08-03T16:09:58Z2021-02-15T11:30:34ZkiwiPy: Robust, high-volume, messaging for big-data and computational science workflowsacceptedv0.6.02020-06-03 17:07:48 UTC522020-08-03 16:09:58 UTC520202351MartinUhrinDepartment of Energy Conversion and Storage, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark, National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland, Theory and Simulation of Materials (THEOS), Faculté des Sciences et Techniques de l’Ingénieur, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland0000-0001-6902-1289SebastiaanP.HuberNational Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland, Theory and Simulation of Materials (THEOS), Faculté des Sciences et Techniques de l’Ingénieur, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland10.21105/joss.02351https://doi.org/10.5281/zenodo.3970461Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.02351.pdfpython, high-throughput computing, message broker, scientific workflows, fault-tolerant computing