tag:joss.theoj.org,2005:/papers/tagged/annotationJournal of Open Source Software2023-08-14T16:43:04ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/41712023-08-14T16:43:04Z2023-08-15T00:01:42Zms3: A parser for MuseScore files, serving as data factory for annotated music corporaaccepted1.1.22023-01-17 22:15:45 UTC882023-08-14 16:43:04 UTC820235195JohannesHentschelÉcole Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1986-9545MartinRohrmeierÉcole Polytechnique Fédérale de Lausanne, Switzerland0000-0002-4323-725710.21105/joss.05195https://doi.org/10.5281/zenodo.8154984Pythonhttps://joss.theoj.org/papers/10.21105/joss.05195.pdfpython, music, scores, corpus, corpora, data, musescore, tab-separated valuestag:joss.theoj.org,2005:Paper/44802023-08-04T17:17:18Z2023-08-05T00:01:30ZEcoAssist: A no-code platform to train and deploy custom YOLOv5 object detection modelsacceptedv4.02023-05-11 09:57:40 UTC882023-08-04 17:17:18 UTC820235581Petervan LunterenIndependent Researcher, The Netherlands0000-0001-5488-422510.21105/joss.05581https://doi.org/10.5281/zenodo.7223363Pythonhttps://joss.theoj.org/papers/10.21105/joss.05581.pdfartificial intelligence, machine learning, deep learning, object detection, yolov5, annotation tool, cameratrapstag:joss.theoj.org,2005:Paper/38442023-06-13T08:24:45Z2023-06-14T00:01:30ZHexatomic: An extensible, OS-independent platform for deep multi-layer linguistic annotation of corporaacceptedv1.0.12022-08-30 08:41:55 UTC862023-06-13 08:24:45 UTC820234825StephanDruskatGerman Aerospace Center (DLR), Institute for Software Technology, Berlin, Germany, Friedrich Schiller University Jena, Department of English Studies, Jena, Germany0000-0003-4925-7248ThomasKrauseHumboldt-Universität zu Berlin, Department of German Studies and Linguistics, Berlin, Germany0000-0003-3731-2422ClaraLachenmaierFriedrich Schiller University Jena, Department of English Studies, Jena, Germany0000-0002-9207-3420BastianBunzeckFriedrich Schiller University Jena, Department of English Studies, Jena, Germany10.21105/joss.04825https://doi.org/10.5281/zenodo.7778709Java, ANTLRhttps://joss.theoj.org/papers/10.21105/joss.04825.pdflinguistics, linguistic corpora, multi-layer annotationtag:joss.theoj.org,2005:Paper/43962023-06-12T08:03:36Z2023-06-20T20:35:26ZDeepOF: a Python package for supervised and unsupervised pattern recognition in mice motion tracking dataacceptedv0.22023-04-12 15:39:51 UTC862023-06-12 08:03:36 UTC820235394LucasMirandaResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-5484-6744JoeriBordesResearch Group Neurobiology of Stress Resilience, Max Planck Institute of Psychiatry, Munich, Germany0000-0003-2909-2976BennoPützResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-2208-209XMathiasV.SchmidtResearch Group Neurobiology of Stress Resilience, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-3788-2268BertramMüller-MyhsokResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-0719-101X10.21105/joss.05394https://doi.org/10.5281/zenodo.8013401Pythonhttps://joss.theoj.org/papers/10.21105/joss.05394.pdfbiology, neuroscience, behavioral annotationtag:joss.theoj.org,2005:Paper/43702023-04-13T08:32:15Z2023-04-14T00:03:14ZCrowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data.accepted5.0.02023-03-29 14:09:07 UTC842023-04-13 08:32:15 UTC820235338DavidNicholsonIndependent Research, USA0000-0002-4261-471910.21105/joss.05338https://doi.org/10.5281/zenodo.7781587Pythonhttps://joss.theoj.org/papers/10.21105/joss.05338.pdfanimal acoustic communication, bioacousticstag:joss.theoj.org,2005:Paper/39492022-12-13T23:25:17Z2022-12-14T11:08:15ZInspectorCell: Finding Ground Truth in Multiplexed Microscopy Imagesaccepted0.3.12022-10-07 18:08:15 UTC802022-12-13 23:25:17 UTC720224949AndreGosselinkInstitute of Medical Statistics and Computational Biology, Faculty of Medicine, University of Cologne, Cologne, Germany, R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany0000-0003-0181-456XTatsianaHoferCenter for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, AustriaElviraCriado-MoronatiR&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, GermanyArndtvon HaeselerCenter for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, Austria, Faculty of Computer Science, University of Vienna, Vienna, AustriaJuttaKolletR&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany10.21105/joss.04949https://doi.org/10.5281/zenodo.7434875Pythonhttps://joss.theoj.org/papers/10.21105/joss.04949.pdfbiology, multiplex, microscopy, annotationtag:joss.theoj.org,2005:Paper/36352022-11-02T08:42:34Z2022-11-03T00:01:31ZMSMetaEnhancer: A Python package for mass spectra metadata annotationacceptedv0.2.32022-05-30 06:31:59 UTC792022-11-02 08:42:34 UTC720224494MatejTrojákRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno, Czech Republic0000-0003-0841-2707HelgeHechtRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno, Czech Republic0000-0001-6744-996XMartinČechRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno, Czech Republic0000-0002-9318-1781ElliottJamesPriceRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno, Czech Republic0000-0001-5691-700010.21105/joss.04494https://doi.org/10.5281/zenodo.7211726Pythonhttps://joss.theoj.org/papers/10.21105/joss.04494.pdfmass spectra, annotationtag:joss.theoj.org,2005:Paper/36102022-09-05T10:04:38Z2022-10-11T06:54:05ZBTE: a Python module for pandemic-scale mutation-annotated phylogenetic treesacceptedv0.8.12022-05-17 23:22:33 UTC772022-09-05 10:04:38 UTC720224433JakobMcBroomeDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0002-5002-5156YatishTurakhiaDepartment of Electrical and Computer Engineering, University of California, San Diego; San Diego, CA 92093, USA0000-0001-5600-2900RussellCorbett-DetigDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0001-6535-247810.21105/joss.04433https://doi.org/10.5281/zenodo.7036163Python, C++, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04433.pdfphylogenetics, epidemiology, SARS-CoV-2tag:joss.theoj.org,2005:Paper/36272022-08-26T09:50:38Z2022-08-27T00:01:16ZMNE-ICALabel: Automatically annotating ICA components with ICLabel in Pythonacceptedv0.12022-05-24 18:28:24 UTC762022-08-26 09:50:38 UTC720224484AdamLiDepartment of Computer Science, Columbia University, New York, United States0000-0001-8421-365XJacobFeitelbergDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, United States0000-0002-4551-0245AnandPrakashSainiHuman Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland0000-0003-3595-5969RichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798MathieuScheltienneHuman Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland, Institute of Bioengineering, Center for Neuroprosthetics, EPFL, Geneva, Switzerland, Department of Radiology and Medical Informatics, University of Geneva (UNIGE), Geneva, Switzerland0000-0001-8316-743610.21105/joss.04484https://doi.org/10.5281/zenodo.7017165Pythonhttps://joss.theoj.org/papers/10.21105/joss.04484.pdfMNE, MEG, EEG, iEEG, ICA, EEGLabtag:joss.theoj.org,2005:Paper/35012022-08-24T13:08:20Z2022-08-25T00:01:37ZIpyannotator: the infinitely hackable annotation frameworkaccepted0.8.12022-04-13 16:13:01 UTC762022-08-24 13:08:20 UTC720224480ÍtaloEpifânioPalaimon GmbHOleksandrPysarenkoPalaimon GmbHImmanuelBayerPalaimon GmbH10.21105/joss.04480https://doi.org/10.5281/zenodo.7018311https://joss.theoj.org/papers/10.21105/joss.04480.pdfPython, Jupyter Notebook, Annotator, Annotations