tag:joss.theoj.org,2005:/papers/tagged/analysisJournal of Open Source Software2024-03-27T23:48:03ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/51402024-03-27T23:48:03Z2024-03-28T00:11:53ZTDApplied: An R package for machine learning and inference with persistence diagramsacceptedv3.0.22024-01-25 19:46:31 UTC952024-03-27 23:48:03 UTC920246321ShaelBrownDepartment of Quantitative Life Sciences, McGill University, Montreal, Canada0000-0001-8868-2867RezaFarivar-MohseniMcGill Vision Research, Department of Opthamology, McGill University, Montreal, Canada0000-0002-3123-262710.21105/joss.06321https://doi.org/10.5281/zenodo.10814141R, C++, Chttps://joss.theoj.org/papers/10.21105/joss.06321.pdftopological data analysis, persistent homologytag:joss.theoj.org,2005:Paper/47592024-03-20T16:19:58Z2024-03-21T00:23:03ZPywaterflood: Well connectivity analysis through capacitance-resistance modelingacceptedv0.3.12023-09-16 18:42:32 UTC952024-03-20 16:19:58 UTC920246191FrankMalePennsylvania State University, University Park, PA, USA0000-0002-3402-557810.21105/joss.06191https://doi.org/10.5281/zenodo.10815882Python, Rusthttps://joss.theoj.org/papers/10.21105/joss.06191.pdfwell connectivity analysis, waterfloods, CO2 floods, Geothermal energy, multiphase flowtag:joss.theoj.org,2005:Paper/46362024-03-09T11:15:15Z2024-03-10T00:01:20Zkonfound: An R Sensitivity Analysis Package to Quantify the Robustness of Causal Inferencesaccepted0.4.02023-07-31 19:56:25 UTC952024-03-09 11:15:15 UTC920245779SarahNarvaizUniversity of Tennessee, Knoxville, Knoxville, TN, USAQinyunLinUniversity of Gothenburg, Gothenburg, SEJoshuaM.RosenbergUniversity of Tennessee, Knoxville, Knoxville, TN, USAKennethA.FrankMichigan State University, East Lansing, MI, USASpiroJ.MaroulisArizona State University, Tempe, AZ, USAWeiWangUniversity of Tennessee, Knoxville, Knoxville, TN, USARanXuUniversity of Connecticut, Hartford, CT, USA10.21105/joss.05779https://doi.org/10.5281/zenodo.10708094Rhttps://joss.theoj.org/papers/10.21105/joss.05779.pdfSensitivity analysis, Causal inferencetag:joss.theoj.org,2005:Paper/47262024-03-06T17:58:44Z2024-03-07T00:00:25ZPyrokinetics - A Python library to standardise gyrokinetic analysisacceptedv0.5.02023-08-31 12:49:56 UTC952024-03-06 17:58:44 UTC920245866BhavinS.PatelCulham Centre for Fusion Energy, Abingdon OX14 3DB, UK0000-0003-0121-1187PeterHillUniversity of York, Heslington, Y010 5DD, UK0000-0003-3092-1858LiamPattinsonUniversity of York, Heslington, Y010 5DD, UK0000-0001-8604-6904MaurizioGiacominUniversity of York, Heslington, Y010 5DD, UK, University of Padua, Padua, 35122, Italy0000-0003-2821-2008ArkapravaBokshiUniversity of York, Heslington, Y010 5DD, UK0000-0001-7095-7172DanielKennedyCulham Centre for Fusion Energy, Abingdon OX14 3DB, UK0000-0001-7666-782XHarryG.DuddingCulham Centre for Fusion Energy, Abingdon OX14 3DB, UK0000-0002-3413-0861Jason.F.ParisiPrinceton Plasma Physics Laboratory, Princeton, NJ 08536, USA0000-0003-1328-7154TomF.NeiserGeneral Atomics, San Diego, CA 92121, USA0000-0002-8763-3016AjayC.JayalekshmiUniversity of Warwick, Warwick, CV4 7AL, UK0000-0002-6447-581XDavidDickinsonUniversity of York, Heslington, Y010 5DD, UK0000-0002-0868-211XJuanRuizRuizUniversity of Oxford, Oxford OX1 3PU, UK0000-0003-4258-527310.21105/joss.05866https://doi.org/10.5281/zenodo.10472477Pythonhttps://joss.theoj.org/papers/10.21105/joss.05866.pdfgyrokinetics, turbulence, plasma, tokamak, fusion, magnetic confinementtag:joss.theoj.org,2005:Paper/42102024-03-01T19:19:41Z2024-03-16T15:02:21ZMobilkit: A Python Toolkit for Urban Resilience and Disaster Risk Management Analyticsacceptedv0.2.62023-02-15 14:52:06 UTC952024-03-01 19:19:41 UTC920245201EnricoUbaldiMindEarth, Switzerland0000-0003-1685-9939TakahiroYabeMassachusetts Institute of Technology, USA0000-0001-8967-1967NicholasJonesThe World Bank, USAMahamFaisalKhanThe World Bank, USAAlessandraFeliciottiMindEarth, Switzerland0000-0002-1471-5360RiccardoDi ClementeComplex Connections Lab, Network Science Institute, Northeastern University London, London, E1W 1LP, United Kingdom., The Alan Turing Institute, London, NW12DB, United Kingdom.0000-0001-8005-6351SatishV.UkkusuriPurdue University, USAEmanueleStranoMindEarth, Switzerland0000-0002-2339-682410.21105/joss.05201https://doi.org/10.6084/m9.figshare.24707115Pythonhttps://joss.theoj.org/papers/10.21105/joss.05201.pdfmobile phone data, disaster resilience, human mobility, geospatial analysistag:joss.theoj.org,2005:Paper/51272024-02-29T21:34:54Z2024-03-01T00:00:22ZCoSApp: a Python library to create, simulate and design complex systems.acceptedv0.15.32024-01-23 12:22:22 UTC942024-02-29 21:34:54 UTC920246292ÉtienneLacSafran Tech, Digital Sciences & Technologies Department, France0000-0002-6964-0044GuySpiegeleertwiinIT, France0009-0005-9828-0550AdrienDelsalletwiinIT, France0009-0001-8126-4045FrédéricCollonvalWebScIT, France0009-0000-3579-3424Duc-TrungLêQuantStack, France0009-0000-0415-8399MathiasMalandainInria centre at Rennes University, France0000-0001-9740-491410.21105/joss.06292https://doi.org/10.5281/zenodo.10722403Python, C#, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06292.pdfMultidisciplinary Design Analysis and Optimization, System designtag:joss.theoj.org,2005:Paper/48402024-02-28T01:15:09Z2024-02-29T00:01:19Zscida: scalable analysis for scientific big dataacceptedv0.2.32023-10-09 11:11:58 UTC942024-02-28 01:15:09 UTC920246064ChrisByrohlHeidelberg University, Institute for Theoretical Astronomy, Albert-Ueberle-Str. 2, 69120 Heideberg, Germany0000-0002-0885-8090DylanNelsonHeidelberg University, Institute for Theoretical Astronomy, Albert-Ueberle-Str. 2, 69120 Heideberg, Germany0000-0001-8421-589010.21105/joss.06064https://doi.org/10.5281/zenodo.10681463Pythonhttps://joss.theoj.org/papers/10.21105/joss.06064.pdfsimulations, i/o, point cloudstag:joss.theoj.org,2005:Paper/51202024-02-27T22:28:57Z2024-03-08T22:12:44ZLobsterPy: A package to automatically analyze LOBSTER runsacceptedv0.3.62024-01-19 14:16:48 UTC942024-02-27 22:28:57 UTC920246286AakashAshokNaikFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany, Friedrich Schiller University Jena, Institute of Condensed Matter Theory and Solid-State Optics, Jena, 07743, Germany0000-0002-6071-6786KatharinaUeltzenFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany0009-0003-2967-1182ChristinaErturalFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany0000-0002-7696-5824AdamJ.JacksonScientific Computing Department, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, OX11 0QX, UK0000-0001-5272-6530JanineGeorgeFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany, Friedrich Schiller University Jena, Institute of Condensed Matter Theory and Solid-State Optics, Jena, 07743, Germany0000-0001-8907-033610.21105/joss.06286https://doi.org/10.5281/zenodo.10713348Pythonhttps://joss.theoj.org/papers/10.21105/joss.06286.pdfAutomation, Bonding analysis, Machine learningtag:joss.theoj.org,2005:Paper/49682024-02-27T21:44:24Z2024-02-28T00:01:10ZKoverage: Read-coverage analysis for massive (meta)genomics datasetsaccepted0.1.72023-11-30 06:28:29 UTC942024-02-27 21:44:24 UTC920246235MichaelJ.RoachFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia, Adelaide Centre for Epigenetics and the South Australian Immunogenomics Cancer Institute, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA, Australia0000-0003-1488-5148BradleyJ.HartHealth and Biomedical Innovation, Clinical and Health Sciences, University of South Australia, SA, Australia0000-0001-8110-2460SarahJ.BeecroftPawsey Supercomputing Research Centre, Kensington, WA, Australia0000-0002-3935-2279BhavyaPapudeshiFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia0000-0001-5359-3100LauraK.InglisFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia0000-0001-7919-8563SusannaR.GrigsonFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia0000-0003-4738-3451VijiniMallawaarachchiFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia0000-0002-2651-8719GeorgeBourasAdelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA, Australia, The Department of Surgery – Otolaryngology Head and Neck Surgery, Central Adelaide Local Health Network, Adelaide, SA, Australia0000-0002-5885-4186RobertA.EdwardsFlinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, SA, Australia0000-0001-8383-894910.21105/joss.06235https://doi.org/10.5281/zenodo.10633263Pythonhttps://joss.theoj.org/papers/10.21105/joss.06235.pdfSnakemake, Genomics, Metagenomicstag:joss.theoj.org,2005:Paper/47722024-02-24T09:18:23Z2024-02-25T00:00:23ZBGmisc: An R Package for Extended Behavior Genetics Analysisacceptedv1.02023-09-20 20:51:36 UTC942024-02-24 09:18:23 UTC920246203S.MasonGarrisonDepartment of Psychology, Wake Forest University, North Carolina, USA0000-0002-4804-6003MichaelD.HunterDepartment of Human Development and Family Studies, Pennsylvania State University, Pennsylvania, USA0000-0002-3651-6709XuanyuLyuDepartment of Psychology, Wake Forest University, North Carolina, USA, Institute for Behavioral Genetics, University of Colorado at Boulder, Colorado, USA, Department of Psychology \& Neuroscience, University of Colorado at Boulder, Colorado, USA0000-0002-2841-5529JonathanD.TrattnerDepartment of Psychology, Wake Forest University, North Carolina, USA0000-0002-1097-7603S.AlexandraBurtDepartment of Psychology, Michigan State University, Michigan, USA0000-0001-5538-743110.21105/joss.06203https://doi.org/10.6084/m9.figshare.25238536R, Rezhttps://joss.theoj.org/papers/10.21105/joss.06203.pdfpedigrees, behavior genetics