JOSS Papers: Taxonomy

All Papers
4013
 Published Papers
3568
 Active Papers
444
published Published 5 months ago

PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality

Python
@RVanDamme
10.21105/joss.09188
published Published about 1 year ago

Taxonomy Resolver: A Python package for building and filtering taxonomy trees

Python
@biomadeira
10.21105/joss.07604
published Published over 1 year ago

Tidytacos: An R package for analyses on taxonomic composition of microbial communities

R
@wsmets
10.21105/joss.06313
published Published over 2 years ago

dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format

R
@joelnitta
10.21105/joss.06215
published Published almost 3 years ago

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

@Midnighter
10.21105/joss.05627
published Published about 3 years ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python
@ParkvilleData
10.21105/joss.04851
published Published over 3 years ago

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy

Python
@ggonnella
10.21105/joss.04755
published Published almost 4 years ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published over 4 years ago

Sepia, a taxonomy oriented read classifier in Rust

Python Rust
@hcdenbakker
10.21105/joss.03839
published Published over 5 years ago

EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

Python
@akrinos
10.21105/joss.02817
Displaying papers 1 - 10 of 14 in total

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ISSN 2475-9066