JOSS Papers: Systems biology

All Papers
3384
 Published Papers
2975
 Active Papers
409
published Published 3 months ago

jax-smfsb: A Python library for stochastic systems biology modelling and inference

Python
@darrenjw
10.21105/joss.07491
published Published 5 months ago

DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology

C++ GLSL
@SoilRos
10.21105/joss.06836
published Published 10 months ago

scribl: A system for the semantic capture of relationships in biological literature

Python
@alexlancaster
10.21105/joss.06645
published Published over 1 year ago

BASICO: A simplified Python interface to COPASI

Python
@fbergmann
10.21105/joss.05553
published Published about 2 years ago

Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape

Python Cython Jupyter Notebook
@ayush9pandey
10.21105/joss.05057
published Published about 3 years ago

PyBioPAX: biological pathway exchange in Python

Python
@bgyori
10.21105/joss.04136
published Published over 3 years ago

Cacatoo: building, exploring, and sharing spatially structured models of biological systems

JavaScript
@bramvandijk88
10.21105/joss.03948
published Published over 3 years ago

A flexible search system for high-accuracy identification of biological entities and molecules

JavaScript
@maxkfranz
10.21105/joss.03756
published Published over 3 years ago

Heta compiler: a software tool for the development of large-scale QSP models and compilation into simulation formats

JavaScript M
@metelkin
10.21105/joss.03708
published Published over 3 years ago

OSTIR: open source translation initiation rate prediction

R Python
@jeffreybarrick
10.21105/joss.03362
Displaying papers 1 - 10 of 12 in total

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ISSN 2475-9066