tag:joss.theoj.org,2005:/papers/tagged/SegmentationJournal of Open Source Software2024-03-19T09:01:07ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48212024-03-19T09:01:07Z2024-03-20T00:01:13ZGTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacingsacceptedv2.0.12023-09-28 22:06:14 UTC952024-03-19 09:01:07 UTC920246306SaipraneethDevunuriDepartment of Civil and Environmental Engineering, University of Illinois Urbana-Champaign0000-0002-5911-4681LewisLeheDepartment of Civil and Environmental Engineering, University of Illinois Urbana-Champaign0000-0001-8029-170610.21105/joss.06306https://doi.org/10.5281/zenodo.10681151Pythonhttps://joss.theoj.org/papers/10.21105/joss.06306.pdfGTFS, Public Transit, Stop Spacings, Bus Stopstag:joss.theoj.org,2005:Paper/44912023-09-12T20:03:28Z2023-09-13T00:01:13Zsamgeo: A Python package for segmenting geospatial data with the Segment Anything Model (SAM)acceptedv0.6.22023-05-18 15:31:48 UTC892023-09-12 20:03:28 UTC820235663QiushengWuDepartment of Geography & Sustainability, University of Tennessee, Knoxville, TN 37996, United States0000-0001-5437-4073LucasPradoOscoFaculty of Engineering and Architecture and Urbanism, University of Western São Paulo, Rod. Raposo Tavares, km 572 - Limoeiro, Pres. Prudente 19067-175, SP, Brazil0000-0002-0258-536X10.21105/joss.05663https://doi.org/10.5281/zenodo.8338074Pythonhttps://joss.theoj.org/papers/10.21105/joss.05663.pdfgeospatial, segment anything, deep learning, satellitetag:joss.theoj.org,2005:Paper/40872023-06-23T18:09:58Z2023-06-24T16:15:41ZTopoPyScale: A Python Package for Hillslope Climate Downscalingacceptedv0.1.52022-12-14 13:49:47 UTC862023-06-23 18:09:58 UTC820235059SimonFilholDepartment of Geosciences, University of Oslo, Norway0000-0003-1282-7307JoelFiddesWSL Institute for Snow and Avalanche Research SLF, Switzerland0000-0003-2870-6972KristofferAalstadDepartment of Geosciences, University of Oslo, Norway0000-0002-2475-373110.21105/joss.05059https://doi.org/10.5281/zenodo.8043606Pythonhttps://joss.theoj.org/papers/10.21105/joss.05059.pdfclimate science, downscaling, xarray, dem segmentation, snow, permafrosttag:joss.theoj.org,2005:Paper/40942023-03-28T13:04:40Z2023-03-29T08:47:24ZBrainchop: In-browser MRI volumetric segmentation and renderingacceptedv1.4.02022-12-17 19:58:47 UTC832023-03-28 13:04:40 UTC820235098MohamedMasoudTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, United States of America0000-0002-5365-242XFarfallaHuTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, United States of America, Department of Computer Science, Georgia State University, Atlanta, United States of America0000-0002-1816-2011SergeyPlisTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, United States of America, Department of Computer Science, Georgia State University, Atlanta, United States of America0000-0003-0040-036510.21105/joss.05098https://doi.org/10.5281/zenodo.7735848Less, SCSS, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05098.pdfvisualization, Web machine learning, Magnetic resonance imagingtag:joss.theoj.org,2005:Paper/37612022-10-09T08:06:59Z2022-10-10T00:01:28ZVolume Segmantics: A Python Package for Semantic Segmentation of Volumetric Data Using Pre-trained PyTorch Deep Learning
Modelsacceptedv0.2.62022-08-03 10:44:21 UTC782022-10-09 08:06:59 UTC720224691OliverN. f.KingDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, Oxfordshire, UK0000-0002-6152-7207DimitriosBellosRosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, Oxfordshire, UK0000-0002-8015-3191MarkBashamDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, Oxfordshire, UK, Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, Oxfordshire, UK0000-0002-8438-141510.21105/joss.04691https://doi.org/10.5281/zenodo.7143363Pythonhttps://joss.theoj.org/papers/10.21105/joss.04691.pdfsegmentation, deep learning, volumetric, images, pre-trainedtag:joss.theoj.org,2005:Paper/37212022-08-26T10:06:44Z2022-08-27T00:01:11ZTessPy: a python package for geographical tessellationacceptedv0.1.02022-07-14 14:27:17 UTC762022-08-26 10:06:44 UTC720224620SiavashSakiFrankfurt University of Applied Sciences, Frankfurt am Main, Germany, Research Lab for Urban Transport, Frankfurt am Main, Germany0000-0002-5413-3007JonasHamannFrankfurt University of Applied Sciences, Frankfurt am Main, Germany, Research Lab for Urban Transport, Frankfurt am Main, Germany0000-0002-3681-911XTobiasHagenFrankfurt University of Applied Sciences, Frankfurt am Main, Germany, Research Lab for Urban Transport, Frankfurt am Main, Germany0000-0003-3717-792910.21105/joss.04620https://doi.org/10.5281/zenodo.7016503Pythonhttps://joss.theoj.org/papers/10.21105/joss.04620.pdfTessellation, Urban Computing, OpenStreetMap, City Segmentationtag:joss.theoj.org,2005:Paper/34632022-08-05T18:36:00Z2022-08-06T02:57:34ZOpen-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7Tacceptedv0.32022-04-11 01:36:26 UTC762022-08-05 18:36:00 UTC720224368JerynChangSchool of Biomedical Sciences, The University of Queensland0000-0002-6659-365XFrederikSteynSchool of Biomedical Sciences, The University of Queensland, Department of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland0000-0002-4782-3608ShyuanNgoDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland, Australian Institute of Bioengineering and Nanotechnology, The University of Queensland0000-0002-1388-2108RobertHendersonDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland0000-0002-2820-8183ChristineGuoActiGraph, LLC, Pensacola, FL, USASteffenBollmannCentre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0002-2909-0906JurgenFrippCSIRO Health and Biosecurity, The Australian eHealth Research Centre, Brisbane, Australia0000-0001-9705-0079MarkusBarthCentre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0002-0520-1843ThomasShawDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Centre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0003-2490-053210.21105/joss.04368https://doi.org/10.5281/zenodo.6874987Pythonhttps://joss.theoj.org/papers/10.21105/joss.04368.pdfDocker, Apptainer, ANTs, MRI, Segmentation, Multi-atlas label fusiontag:joss.theoj.org,2005:Paper/31032022-05-05T15:17:18Z2022-05-06T08:43:39ZThe 3D Slicer RVXLiverSegmentation plug-in for interactive liver anatomy reconstruction from medical imagesaccepted1.0.02021-10-05 19:24:10 UTC732022-05-05 15:17:18 UTC720223920JonasLamyUniversité Lyon 2, LIRIS (UMR 5205) Lyon, FranceThibaultPelletierKitware SAS, Villeurbanne, FranceGuillaumeLienemannUniversité Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, FranceBenoîtMagninUniversité Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, FranceBertrandKerautretUniversité Lyon 2, LIRIS (UMR 5205) Lyon, FranceNicolasPassatUniversité de Reims Champagne Ardenne, CReSTIC, EA 3804, 51100 Reims, FranceJulienFinetKitware SAS, Villeurbanne, FranceAntoineVacavantUniversité Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France10.21105/joss.03920https://doi.org/10.5281/zenodo.6513517Pythonhttps://joss.theoj.org/papers/10.21105/joss.03920.pdf3D Slicer, medical imaging, image segmentation, image processing, annotation, livertag:joss.theoj.org,2005:Paper/30982021-12-02T15:30:48Z2021-12-03T00:01:32Zpiecewise-regression (aka segmented regression) in Pythonaccepted1.0.42021-10-04 12:38:34 UTC682021-12-02 15:30:48 UTC620213859CharliePilgrimCentre for Doctoral Training in Mathematics for Real-World Systems, University of Warwick, Coventry, UK, The Alan Turing Institute, London, UK0000-0002-3800-677X10.21105/joss.03859https://doi.org/10.5281/zenodo.5742317Pythonhttps://joss.theoj.org/papers/10.21105/joss.03859.pdfregression, statistics, segmented regression, breakpoint analysistag:joss.theoj.org,2005:Paper/27672021-09-30T16:22:48Z2022-01-18T12:03:45ZCOVID-19 Lung Segmentationaccepted2.0.02021-06-16 14:26:47 UTC652021-09-30 16:22:48 UTC620213447RiccardoBiondiDepartment of Experimental, Diagnostic and Specialty Medicine of Bologna UniversityNicoCurtieDIMESLab, Department of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0001-5802-1195EnricoGiampierieDIMESLab, Department of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0003-2269-2338GastoneCastellaniDepartment of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0003-4892-925X10.21105/joss.03447https://doi.org/10.5281/zenodo.5535568Python, PowerShellhttps://joss.theoj.org/papers/10.21105/joss.03447.pdfradiomics, artificial-intelligence, machine-learning, deep-learning, medical-imaging, chest-CT, python3