JOSS Papers: RNA-seq

Published Papers

published Published about 1 month ago

AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment

Nextflow

10.21105/joss.07545

published Published 5 months ago

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker

Perl Python

10.21105/joss.06272

published Published almost 3 years ago

MitoHEAR: an R package for the estimation and downstream statistical analysis of the mitochondrial DNA heteroplasmy calculated from single-cell datasets

R

@gabrielelubatti

10.21105/joss.04265

published Published over 4 years ago

NEEP: null empirically estimated p-values for high-throughput molecular survival analysis

C++ C

10.21105/joss.02044

published Published over 5 years ago

rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API

R

10.21105/joss.01880

published Published over 5 years ago

The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq

R XQuery

10.21105/joss.01627

published Published almost 6 years ago

GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files

Python

10.21105/joss.01344

published Published almost 6 years ago

Compare Expression Profiles for Pre-defined Gene Groups with C-REx

R

10.21105/joss.01255

published Published about 6 years ago

strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq

R

10.21105/joss.01145

published Published over 6 years ago

RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease

C Python

10.21105/joss.00583

Displaying papers 1 - 10 of 12 in total

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