tag:joss.theoj.org,2005:/papers/tagged/R%20softwareJournal of Open Source Software2024-02-09T13:51:24ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50422024-02-09T13:51:24Z2024-02-10T00:01:17Zelsa: an elegant framework for tomographic reconstructionaccepted0.8.02023-12-20 14:16:50 UTC942024-02-09 13:51:24 UTC920246174DavidFrankDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0009-0006-4989-2144JonasJeltenDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0002-5167-2419TobiasLasserDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0001-5669-920X10.21105/joss.06174https://doi.org/10.5281/zenodo.10609174Python, C++, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06174.pdfComputed Tomography, X-ray Computed Tomography, Tomography, Tomographic Reconstruction, Inverse Problems, Software Frameworktag:joss.theoj.org,2005:Paper/49472024-01-24T17:19:02Z2024-02-25T07:02:22ZViash: A meta-framework for building reusable workflow modulesaccepted0.8.12023-11-21 12:26:06 UTC932024-01-24 17:19:02 UTC920246089RobrechtCannoodtData Intuitive, Lebbeke, Belgium, Data Mining and Modelling for Biomedicine group, VIB Center for Inflammation Research, Ghent, Belgium, Department of Applied Mathematics, Computer Science, and Statistics, Ghent University, Ghent, Belgium0000-0003-3641-729XHendrikCannoodtData Intuitive, Lebbeke, Belgium0000-0002-0032-6719DriesSchaumontData Intuitive, Lebbeke, Belgium0000-0002-4389-0440KaiWaldrantData Intuitive, Lebbeke, Belgium0009-0003-8555-1361EricVan de KerckhoveData Intuitive, Lebbeke, BelgiumAndyBoschmansData Intuitive, Lebbeke, Belgium0009-0008-8793-4661DriesDe MaeyerDiscovery Technology and Molecular Pharmacology, Janssen Research & Development, Pharmaceutical Companies of Johnson & Johnson, Beerse, Belgium0000-0002-1314-3348ToniVerbeirenData Intuitive, Lebbeke, Belgium0000-0002-7007-686610.21105/joss.06089https://doi.org/10.5281/zenodo.10563479Scala, Nextflowhttps://joss.theoj.org/papers/10.21105/joss.06089.pdfBioinformatics, Workflows, Software development, Reproducibility, Cloud computing, Dockertag:joss.theoj.org,2005:Paper/43772023-11-15T11:05:17Z2023-11-19T16:18:02Zlczexplore: an R package to explore Local Climate Zone classificationsaccepted0.0.12023-03-31 12:46:07 UTC912023-11-15 11:05:17 UTC820235445MatthieuGousseffCNRS, Lab-STICC, UMR 6285, Vannes, France0000-0002-7106-2677ErwanBocherCNRS, Lab-STICC, UMR 6285, Vannes, France0000-0002-4936-7079JérémyBernardCNRS, Lab-STICC, UMR 6285, Vannes, France, University of Savoie Mont-Blanc, LOCIE, UMR 5271, France, University of Gothenburg, Department of Earth Sciences, Sweden0000-0001-7374-5722ElisabethLe SauxWiederholdUniversité Bretagne Sud, Lab-STICC, UMR 6285, Vannes, France0000-0002-2079-863310.21105/joss.05445https://doi.org/10.5281/zenodo.10041206Rhttps://joss.theoj.org/papers/10.21105/joss.05445.pdfR SOFTWARE, climate, environment, GIS, spatial analysis, citiestag:joss.theoj.org,2005:Paper/37092023-10-15T06:29:48Z2023-10-19T09:42:05ZOT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezersacceptedv0.2.862022-07-07 16:20:47 UTC902023-10-15 06:29:48 UTC820234877ThierryGallianoInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - FranceGuillaumeGayFrance Bio Imaging ; Montpellier - France0000-0002-5444-5246LaurentLimozinInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - France0000-0001-9523-8086Pierre-HenriPuechInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - France0000-0002-8521-068510.21105/joss.04877https://doi.org/10.5281/zenodo.8345307Pythonhttps://joss.theoj.org/papers/10.21105/joss.04877.pdfoptical tweezers, cell biology, mechanobiologytag:joss.theoj.org,2005:Paper/45232023-10-03T12:45:56Z2023-10-04T00:00:43ZPort: A software tool for digital data donationacceptedv1.0.12023-06-03 10:23:31 UTC902023-10-03 12:45:56 UTC820235596LauraBoeschotenUtrecht University, The Netherlands0000-0002-3536-0474NiekC.de SchipperUniversity of Amsterdam, The Netherlands0000-0002-8462-9791AdriënneM.MendrikEyra Leap B.V., the Netherlands0000-0001-6631-7068Emielvan der VeenEyra Leap B.V., the Netherlands0000-0002-4895-6584BellaStruminskayaUtrecht University, The Netherlands0000-0002-5944-8163HeleenJanssenUniversity of Amsterdam, The Netherlands0000-0002-2785-5741TheoAraujoUniversity of Amsterdam, The Netherlands0000-0002-4633-933910.21105/joss.05596https://doi.org/10.5281/zenodo.8401806JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05596.pdfdata donation, digital trace data, local processing, pyodide, elixirtag:joss.theoj.org,2005:Paper/41032023-08-14T18:55:46Z2023-08-23T14:25:01ZSciris: Simplifying scientific software in Pythonaccepted2.1.02022-12-24 17:36:09 UTC882023-08-14 18:55:46 UTC820235076CliffC.KerrInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, School of Physics, University of Sydney, Sydney, Australia0000-0003-2517-2354PaulaSanz-LeonInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-1545-6380RomeshG.AbeysuriyaInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Burnet Institute, Melbourne, Australia0000-0002-9618-6457GeorgeL.ChadderdonBurnet Institute, Melbourne, Australia, CAE USA, Tampa, USA0000-0002-3034-2330Vlad-ŞtefanHarbuzSaffron Software, Bucharest, RomaniaParhamSaidiSaffron Software, Bucharest, RomaniaMaria del MarQuirogaBurnet Institute, Melbourne, Australia, Melbourne Data Analytics Platform, The University of Melbourne, Melbourne, Australia0000-0002-8943-2808RowanMartin-HughesBurnet Institute, Melbourne, Australia0000-0002-3724-2412SherrieL.KellyBurnet Institute, Melbourne, Australia0000-0002-6232-5586JamieA.CohenInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-8479-1860RobynM.StuartInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark0000-0001-6867-9265AnnaNachesaGoogle, Zürich, Switzerland10.21105/joss.05076https://doi.org/10.5281/zenodo.8245253Pythonhttps://joss.theoj.org/papers/10.21105/joss.05076.pdfpython, scientific software development, computational science, numerical utilities, containers, plottingtag:joss.theoj.org,2005:Paper/43882023-06-15T17:42:51Z2023-06-16T00:01:31ZAPECSS: A software library for cavitation bubble dynamics and acoustic emissionsacceptedv1.32023-04-05 15:58:45 UTC862023-06-15 17:42:51 UTC820235435FabianDennerDepartment of Mechanical Engineering, Polytechnique Montréal, Montréal, H3T 1J4, Québec, Canada0000-0001-5812-061XSörenSchenkeChair of Mechanical Process Engineering, Otto-von-Guericke-Universität Magdeburg, 39106 Magdeburg, Germany0000-0001-8765-372210.21105/joss.05435https://doi.org/10.5281/zenodo.8043400Chttps://joss.theoj.org/papers/10.21105/joss.05435.pdfCavitation, Bubble dynamics, Acoustics, Ultrasound, Rayleigh-Plessettag:joss.theoj.org,2005:Paper/42132023-05-31T09:24:13Z2023-06-01T00:01:34ZHRnV-Calc: A Software for Heart Rate n-Variability and Heart Rate Variability Analysisacceptedv1.02023-02-16 08:52:37 UTC852023-05-31 09:24:13 UTC820235391ChenglinNiuDuke-NUS Medical School, National University of Singapore, Singapore, Singapore0000-0001-6677-7910DagangGuoDuke-NUS Medical School, National University of Singapore, Singapore, SingaporeMarcusEng HockOngDuke-NUS Medical School, National University of Singapore, Singapore, Singapore, Department of Emergency Medicine, Singapore General Hospital, Singapore, SingaporeZhiXiongKohDuke-NUS Medical School, National University of Singapore, Singapore, Singapore, Department of Emergency Medicine, Singapore General Hospital, Singapore, SingaporeGuerryAlexiane LaureMarie-AlixÉcole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, SwitzerlandAndrewFu WahHoDuke-NUS Medical School, National University of Singapore, Singapore, Singapore, Department of Emergency Medicine, Singapore General Hospital, Singapore, SingaporeZhipingLinSchool of Electrical and Electronic Engineering, Nanyang Technological University, SingaporeChengyuLiuSchool of Instrument Science and Engineering, Southeast University, Nanjing, ChinaGariD.CliffordDepartment of Biomedical Informatics, Emory University, Atlanta, GA, United States of America, Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA, United States of AmericaNanLiuDuke-NUS Medical School, National University of Singapore, Singapore, Singapore, SingHealth AI Office, Singapore Health Services, Singapore, Singapore, Institute of Data Science, National University of Singapore, Singapore, Singapore0000-0003-3610-488310.21105/joss.05391https://doi.org/10.5281/zenodo.7963493MATLABhttps://joss.theoj.org/papers/10.21105/joss.05391.pdfGUI, HRnV, HRVtag:joss.theoj.org,2005:Paper/38392023-03-08T15:58:55Z2023-03-09T00:04:48ZOPSDN: an enhanced SDN simulation framework for OPNET Modeleracceptedv0.2.12022-08-26 08:46:57 UTC832023-03-08 15:58:55 UTC820234815ZequnJiaSchool of Computer and Information Technology, Beijing Jiaotong University, Beijing, China., School of Electrical and Data Engineering, University of Technology Sydney, Sydney, Australia.0000-0002-7144-4448YantaoSunSchool of Computer and Information Technology, Beijing Jiaotong University, Beijing, China.QiangLiuSchool of Computer and Information Technology, Beijing Jiaotong University, Beijing, China.10.21105/joss.04815https://doi.org/10.5281/zenodo.7708397C++, C, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04815.pdfPython, C/C++, OPNET, Software-defined networking, network simulationtag:joss.theoj.org,2005:Paper/23002023-02-21T12:58:18Z2023-02-22T00:00:57ZOpenRepGrid.ic: A software for Interpretive Clusteringacceptedv0.5.02021-01-10 21:14:41 UTC822023-02-21 12:58:18 UTC820233292MarkHeckmannDB Station&Service AG, Germany0000-0002-0736-7417VivBurrUniversity of Huddersfield, GB0000-0002-3784-1271NigelKingUniversity of Huddersfield, GB0000-0003-0585-736410.21105/joss.03292https://doi.org/10.5281/zenodo.7655618Rhttps://joss.theoj.org/papers/10.21105/joss.03292.pdfRepertory grid technique, Clustering, Personal Construct Psychology, R package