JOSS Papers: Pipeline

Published Papers

published Published about 19 hours ago

EchoFlow: End-to-end self-supervised sonar-image pipeline

Python

10.21105/joss.09240

published Published 29 days ago

TarGene: A Nextflow pipeline for the estimation of genetic effects on human traits via semi-parametric methods.

Nextflow Julia

@olivierlabayle

10.21105/joss.09603

published Published about 1 month ago

nf-core/cutandrun: A Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets

Awk Python Perl Nextflow

@tamara-hodgetts

10.21105/joss.09672

published Published about 1 month ago

nf-core/coproID v2.0: An improved pipeline for the identification of (palaeo)faecal depositors

SCSS Python Nextflow

10.21105/joss.09324

published Published 3 months ago

PyIRD: A Python-Based Data Reduction Pipeline for Subaru/IRD and REACH

Python Jupyter Notebook

10.21105/joss.09126

published Published 3 months ago

DART: A GUI Pipeline for Aligning Histological Brain Sections to 3D Atlases and Automating Laser Microdissection

Jupyter Notebook C C++ Python

10.21105/joss.09109

published Published 4 months ago

ReciPies: A Lightweight Data Transformation Pipeline for Reproducible ML

Jupyter Notebook Python

10.21105/joss.09261

published Published 4 months ago

MotilA – A Python pipeline for the analysis of microglial fine process motility in 3D time-lapse multiphoton microscopy data

Python

@FabrizioMusacchio

10.21105/joss.09267

published Published 4 months ago

PyLongslit: a simple manual Python pipeline for processing of astronomical long-slit spectra recorded with CCD detectors

Python

@KostasValeckas

10.21105/joss.09264

published Published 7 months ago

Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images

Jupyter Notebook Python

10.21105/joss.08457

Displaying papers 1 - 10 of 66 in total

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