tag:joss.theoj.org,2005:/papers/tagged/MorphometryJournal of Open Source Software2022-11-15T13:19:29ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/36852022-11-15T13:19:29Z2022-11-16T00:01:14ZNuclear Morphology Analysis 2.0.0: Improved image analysis software for measuring nuclear shapeacceptedv2.0.02022-06-28 10:03:31 UTC792022-11-15 13:19:29 UTC720224767BenjaminM.SkinnerSchool of Life Sciences, University of Essex, Colchester, United Kingdom0000-0002-7152-116710.21105/joss.04767https://doi.org/10.5281/zenodo.7303498ImageJ Macro, Javahttps://joss.theoj.org/papers/10.21105/joss.04767.pdfmorphometrics, sperm chromatin, nuclear organisationtag:joss.theoj.org,2005:Paper/17142020-10-12T14:17:44Z2021-02-15T11:30:33Zpapaya2: 2D Irreducible Minkowski Tensor computationaccepted2020-05-222020-06-06 11:00:58 UTC542020-10-12 14:17:44 UTC520202538FabianM.SchallerTheoretische Physik 1, FAU Erlangen-Nürnberg, Germany, Institut für Stochastik, Karlsruhe Institute for Technology, Germany0000-0003-2609-9988JennyWagnerZentrum für Astronomie, Universität Heidelberg, Germany0000-0002-4999-3838SebastianC.KapferTheoretische Physik 1, FAU Erlangen-Nürnberg, Germany0000-0002-7591-273910.21105/joss.02538https://doi.org/10.5281/zenodo.4071543Python, C++, Matlabhttps://joss.theoj.org/papers/10.21105/joss.02538.pdfMinkowski Tensors, Morphometry, Image analysis, Voronoi diagram, JavaScripttag:joss.theoj.org,2005:Paper/16772020-07-09T19:42:09Z2021-02-15T11:30:40ZCollatriX: A GUI to collate MorphoMetriX outputsacceptedv1.0.52020-05-23 17:02:50 UTC512020-07-09 19:42:09 UTC520202328ClaraN.BirdGeospatial Ecology of Marine Megafauna Lab, Marine Mammal Institute, Department of Fisheries and Wildlife, Oregon State University, Nicholas School of the Environment, Duke University Marine Laboratory0000-0001-7763-7761KcBierlichNicholas School of the Environment, Duke University Marine Laboratory10.21105/joss.02328https://doi.org/10.5281/zenodo.3937611Pythonhttps://joss.theoj.org/papers/10.21105/joss.02328.pdfDrones, Photogrammetry, GUI, Morphometrytag:joss.theoj.org,2005:Paper/7682020-02-08T21:01:18Z2021-02-15T11:32:41ZScyland3D: Processing 3D landmarksacceptedv1.0.02019-01-03 18:58:33 UTC462020-02-08 21:01:18 UTC520201262FidjiBerioISEM, UMR 5554, CNRS-IRD-UM, 34095 Montpellier, France, IGFL, UMR 5242, CNRS-ENS de Lyon, 69007 Lyon, France0000-0003-0810-9783YannBayleLaBRI, UMR 5800, CNRS, 33400 Talence, France0000-0002-5143-233510.21105/joss.01262https://doi.org/10.5281/zenodo.3637546Pythonhttps://joss.theoj.org/papers/10.21105/joss.01262.pdf3D geometric morphometrics, shape analysis, Landmarktag:joss.theoj.org,2005:Paper/11892020-01-16T00:19:56Z2021-02-15T11:31:42ZMorphoMetriX: a photogrammetric measurement GUI for morphometric analysis of megafaunaacceptedv1.0.02019-08-27 21:23:07 UTC452020-01-16 00:19:56 UTC520201825WalterI.TorresNicholas School of the Environment, Duke University Marine LaboratoryKcBierlichNicholas School of the Environment, Duke University Marine Laboratory10.21105/joss.01825https://doi.org/10.5281/zenodo.3606865Pythonhttps://joss.theoj.org/papers/10.21105/joss.01825.pdfGUI, Photogrammetry, Morphometry, Drones, Remote sensingtag:joss.theoj.org,2005:Paper/12832019-11-20T18:14:41Z2021-02-15T11:31:31Zmomepy: Urban Morphology Measuring Toolkitacceptedv0.12019-10-09 11:46:22 UTC432019-11-20 18:14:41 UTC420191807MartinFleischmannDepartment of Architecture, University of Strathclyde0000-0003-3319-336610.21105/joss.01807https://doi.org/10.5281/zenodo.3544609Pythonhttps://joss.theoj.org/papers/10.21105/joss.01807.pdfurban morphology, morphometrics, geospatial analysis, urban formtag:joss.theoj.org,2005:Paper/6042018-10-02T19:49:45Z2021-02-15T11:33:04Zgraynet: single-subject morphometric networks for neuroscience connectivity applicationsacceptedv0.3.92018-08-25 04:38:22 UTC302018-10-02 19:49:45 UTC32018924PradeepReddyRaamanaRotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada0000-0003-4662-0558StephenC.StrotherRotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada, Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada0000-0002-3198-217X10.21105/joss.00924https://doi.org/10.5281/zenodo.1442846Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.00924.pdfneuroscience, network, morphometry, connectivity, gray matter, graph, histogram, freesurfertag:joss.theoj.org,2005:Paper/2952018-02-12T18:17:56Z2021-02-15T11:33:51ZMasks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometricsacceptedv1.02017-10-19 23:44:01 UTC222018-02-12 18:17:56 UTC32018436ShadiaMikhaelEdinburgh Imaging, The Chancellor’s Building, 1st floor, FU303e, 49 Little France Crescent, Edinburgh, Scotland, UK, EH16 4SB.0000-0002-2490-9548CalumGrayEdinburgh Imaging, The Chancellor’s Building, 1st floor, FU303e, 49 Little France Crescent, Edinburgh, Scotland, UK, EH16 4SB., Edinburgh Clinical Research Facility, University of Edinburgh, Edinburgh, UK.10.21105/joss.00436https://doi.org/10.7488/ds/2302Matlabhttps://joss.theoj.org/papers/10.21105/joss.00436.pdfmetrics, gyrus, masks, thickness, volume, surface area