JOSS Papers: Metagenomics

All Papers
3913
 Published Papers
3304
 Active Papers
609
published Published 6 months ago

GraphBin-Tk: assembly graph-based metagenomic binning toolkit

Python
@Vini2
10.21105/joss.07713
published Published about 1 year ago

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.

R
@CedricMidoux
10.21105/joss.06704
published Published about 1 year ago

Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.

Python
@JeanMainguy
10.21105/joss.06782
published Published over 1 year ago

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Python Nix C
@bluegenes
10.21105/joss.06830
published Published over 1 year ago

Acanthophis: a comprehensive plant hologenomics pipeline

Python
@kdm9
10.21105/joss.06062
published Published almost 2 years ago

Koverage: Read-coverage analysis for massive (meta)genomics datasets

Python
@beardymcjohnface
10.21105/joss.06235
published Published almost 2 years ago

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis

R
@adrientaudiere
10.21105/joss.06038
published Published over 2 years ago

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

@Midnighter
10.21105/joss.05627
published Published almost 3 years ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python
@ParkvilleData
10.21105/joss.04851
published Published almost 3 years ago

Metagenomic classification with KrakenUniq on low-memory computers

Perl
@salzberg
10.21105/joss.04908
Displaying papers 1 - 10 of 18 in total

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ISSN 2475-9066