JOSS Papers: Metagenomics

All Papers
2978
 Published Papers
2661
 Active Papers
317
published Published 3 months ago

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Python Nix C
@bluegenes
10.21105/joss.06830
published Published 6 months ago

Acanthophis: a comprehensive plant hologenomics pipeline

Python
@kdm9
10.21105/joss.06062
published Published 7 months ago

Koverage: Read-coverage analysis for massive (meta)genomics datasets

Python
@beardymcjohnface
10.21105/joss.06235
published Published 9 months ago

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis

R
@adrientaudiere
10.21105/joss.06038
published Published about 1 year ago

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

@Midnighter
10.21105/joss.05627
published Published over 1 year ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python
@ParkvilleData
10.21105/joss.04851
published Published over 1 year ago

Metagenomic classification with KrakenUniq on low-memory computers

Perl
@salzberg
10.21105/joss.04908
published Published over 2 years ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published almost 3 years ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published over 3 years ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
Displaying papers 1 - 10 of 15 in total

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ISSN 2475-9066