tag:joss.theoj.org,2005:/papers/tagged/LASTJournal of Open Source Software2023-02-16T21:45:43ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/39262023-02-16T21:45:43Z2023-02-19T11:09:41ZdirectChillFoam: an OpenFOAM application for direct-chill castingacceptedOF9.0.12022-09-26 11:12:36 UTC822023-02-16 21:45:43 UTC820234871BrunoLebonBrunel Centre for Advanced Solidification Technology, Brunel University London, Uxbridge, UK0000-0002-9389-132910.21105/joss.04871https://doi.org/10.5281/zenodo.7645448C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04871.pdfOpenFOAM, direct-chill casting, metallurgy, computational fluid dynamics, heat transfer, solidificationtag:joss.theoj.org,2005:Paper/9632019-12-18T15:30:17Z2021-02-15T11:32:17Z“Blaster” – a graphical user interface for common sequence analysis toolsacceptedv.1.2.42019-04-13 15:55:39 UTC442019-12-18 15:30:17 UTC420191411StefanieLueckLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0003-0536-835XDimitarDouchkovLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0001-6603-493010.21105/joss.01411https://doi.org/10.5281/zenodo.3576574Pythonhttps://joss.theoj.org/papers/10.21105/joss.01411.pdfsequences, fasta, clustalw, blast, bowtie, bioinformatic, GUI, Windowstag:joss.theoj.org,2005:Paper/1192017-01-28T00:00:00Z2021-02-15T11:34:21Zshmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Pythonacceptedv1.0.22016-11-21 14:25:13 UTC92017-01-28 00:00:00 UTC22017142CamilleScottUniversity of California, Davis0000-0001-8822-877910.21105/joss.00142https://doi.org/10.5281/zenodo.260437Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.00142.pdfbioinformatics, orthology, alignment, LAST, BLAST, pythontag:joss.theoj.org,2005:Paper/1122016-12-05T00:00:00Z2021-02-15T11:34:22ZMultilocus sequence typing by blast from de novo assemblies against PubMLSTacceptedv2.1.16309102016-11-04 11:47:34 UTC82016-12-05 00:00:00 UTC12016118AndrewJ.PagePathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6919-6062BenTaylorPathogen Informatics, Wellcome Trust Sanger InstituteJacquelineA.KeanePathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2021-186310.21105/joss.00118https://doi.org/10.6084/m9.figshare.4285097.v1Perlhttps://joss.theoj.org/papers/10.21105/joss.00118.pdfbioinformatics, MLST, multilocus sequence typing, blast, de novo assembly, bacteria