tag:joss.theoj.org,2005:/papers/tagged/Image%20Analysis?page=2Journal of Open Source Software2020-10-12T14:17:44ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/17142020-10-12T14:17:44Z2021-02-15T11:30:33Zpapaya2: 2D Irreducible Minkowski Tensor computationaccepted2020-05-222020-06-06 11:00:58 UTC542020-10-12 14:17:44 UTC520202538FabianM.SchallerTheoretische Physik 1, FAU Erlangen-Nürnberg, Germany, Institut für Stochastik, Karlsruhe Institute for Technology, Germany0000-0003-2609-9988JennyWagnerZentrum für Astronomie, Universität Heidelberg, Germany0000-0002-4999-3838SebastianC.KapferTheoretische Physik 1, FAU Erlangen-Nürnberg, Germany0000-0002-7591-273910.21105/joss.02538https://doi.org/10.5281/zenodo.4071543Python, C++, Matlabhttps://joss.theoj.org/papers/10.21105/joss.02538.pdfMinkowski Tensors, Morphometry, Image analysis, Voronoi diagram, JavaScripttag:joss.theoj.org,2005:Paper/14342020-02-09T17:12:24Z2021-02-15T11:31:09ZExTemp: A computational and image-processing suite for extracting temporal barcodesaccepted1.02020-01-09 21:44:26 UTC462020-02-09 17:12:24 UTC520202026ShalinShahDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA0000-0002-1406-3577AbhishekDubeyDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA, Computational Sciences and Engineering Division, Health Data Sciences Institute, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, United States0000-0001-8052-7416JohnReifDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA, Department of Computer Science, Duke University, Durham, NC 27708, USA10.21105/joss.02026https://doi.org/10.5281/zenodo.3660411Matlabhttps://joss.theoj.org/papers/10.21105/joss.02026.pdfobject detection, signal processing, drift correction, object tracking, microscopy image analysis, computer vision, TIRF, MATLABtag:joss.theoj.org,2005:Paper/13042020-01-27T16:20:28Z2021-02-15T11:31:28Zmiet: an R package for region of interest analysis from magnetic reasonance imagesaccepted0.1.02019-10-29 10:20:40 UTC452020-01-27 16:20:28 UTC520201862BenoitCombèsEmpenn INSERM - Institut National de la Santé et de la Recherche Médicale, Inria Rennes – Bretagne Atlantique , IRISA_D5 - SIGNAUX ET IMAGES NUMÉRIQUES, ROBOTIQUE0000-0003-4161-709310.21105/joss.01862https://doi.org/10.5281/zenodo.3626693Rhttps://joss.theoj.org/papers/10.21105/joss.01862.pdfMRI, medical imaging, statisticstag:joss.theoj.org,2005:Paper/11802020-01-14T17:21:03Z2021-02-15T11:31:43ZSIHR: a MATLAB/GNU Octave toolbox for single image highlight removalacceptedv0.12019-08-22 19:38:42 UTC452020-01-14 17:21:03 UTC520201822VítorS.RamosFederal University of Rio Grande do Norte, Natal, Brazil0000-0002-7583-557710.21105/joss.01822https://doi.org/10.5281/zenodo.3367760Matlabhttps://joss.theoj.org/papers/10.21105/joss.01822.pdfblind source separation, feature extraction, gnu octave, image color analysis, image enhancement, image processing, image texture analysis, matlab, octavetag:joss.theoj.org,2005:Paper/10172019-06-17T11:05:05Z2021-02-15T11:32:08ZDelira: A High-Level Framework for Deep Learning in Medical Image Analysisacceptedv0.3.22019-05-27 11:31:14 UTC382019-06-17 11:05:05 UTC420191488ChristophHaarburgerInstitute of Imaging and Computer Vision, RWTH Aachen University, GermanyJustusSchockInstitute of Imaging and Computer Vision, RWTH Aachen University, GermanyMichaelBaumgartnerInstitute of Imaging and Computer Vision, RWTH Aachen University, GermanyOliverRippelInstitute of Imaging and Computer Vision, RWTH Aachen University, GermanyDoritMerhofInstitute of Imaging and Computer Vision, RWTH Aachen University, Germany10.21105/joss.01488https://doi.org/10.5281/zenodo.3247307Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01488.pdfpython, deep learning, medical image analysis, pytorch, tensorflowtag:joss.theoj.org,2005:Paper/9012019-05-01T15:10:59Z2021-02-15T11:32:29ZPoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media ImagesacceptedV1.0.02019-02-23 15:01:03 UTC372019-05-01 15:10:59 UTC420191296JeffT.GostickDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0001-7736-7124ZohaibA.KhanDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0003-2115-7798ThomasG.TranterDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada, Department of Chemical Engineering, University College London, London, United Kingdom0000-0003-4721-5941MatthewD.r.KokDepartment of Chemical Engineering, University College London, London, United Kingdom, Department of Chemical Engineering, McGill University, Montreal, QC, Canada0000-0001-8410-9748MehrezAgnaouDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0002-6635-080XMohammadaminSadeghiDepartment of Chemical Engineering, McGill University, Montreal, QC, Canada0000-0002-6756-9117RhodriJervisDepartment of Chemical Engineering, University College London, London, United Kingdom0000-0003-2784-780210.21105/joss.01296https://doi.org/10.5281/zenodo.2642818Pythonhttps://joss.theoj.org/papers/10.21105/joss.01296.pdfporous media, tomography, image analysistag:joss.theoj.org,2005:Paper/7172019-03-29T11:21:29Z2021-02-15T11:32:50Zidvf: Iterative Inversion of Deformation Vector Field with Adaptive Bi-residual Feedback Controlacceptedv1.0.02018-11-02 00:23:09 UTC352019-03-29 11:21:29 UTC420191076Alexandros-StavrosIliopoulosDepartment of Computer Science, Duke University, Durham, NC 27708, USA0000-0002-1959-9792AbhishekDubeyDepartment of Computer Science, Duke University, Durham, NC 27708, USA0000-0001-8052-7416XiaobaiSunDepartment of Computer Science, Duke University, Durham, NC 27708, USA10.21105/joss.01076https://doi.org/10.5281/zenodo.2610844Matlabhttps://joss.theoj.org/papers/10.21105/joss.01076.pdfdeformation vector field, optical flow, deformable registration, fixed-point iteration, inverse consistency, adaptive feedback control, medical image analysis, computer vision, MATLABtag:joss.theoj.org,2005:Paper/6562018-11-30T01:42:11Z2021-02-15T11:32:54ZIsing_OPV v4.0: Experimental Tomography Data Import, Interpretation, and Analysisacceptedv4.0.0-rc.22018-10-09 03:05:52 UTC312018-11-30 01:42:11 UTC320181072MichaelC.HeiberCenter for Hierarchical Materials Design (CHiMaD), Northwestern University, Evanston, Illinois 60208, USA0000-0002-1567-566310.21105/joss.01072https://doi.org/10.5281/zenodo.1710685C++https://joss.theoj.org/papers/10.21105/joss.01072.pdforganic photovoltaics, bulk heterojunction morphology, tomography, Ising model, phase separation, image analysistag:joss.theoj.org,2005:Paper/6672018-11-27T00:30:00Z2021-02-15T11:32:53ZScarplet: A Python package for topographic template matching and diffusion datingaccepted0.1.02018-10-16 16:42:23 UTC312018-11-27 00:30:00 UTC320181066RobertSareDepartment of Geological Sciences, Stanford University0000-0003-3711-6771GeorgeE.HilleyDepartment of Geological Sciences, Stanford University0000-0002-1761-754710.21105/joss.01066https://doi.org/10.5281/zenodo.1492786Pythonhttps://joss.theoj.org/papers/10.21105/joss.01066.pdfgeomorphology, topographic analysis, image processing, diffusion datingtag:joss.theoj.org,2005:Paper/4962018-05-26T16:10:20Z2021-02-15T11:33:22ZThe Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Imagesacceptedv1.4.02018-05-15 01:35:40 UTC252018-05-26 16:10:20 UTC32018745RichardIzzoUniversity at Buffalo0000-0002-0811-6513DavidSteinmanUniversity of Toronto0000-0002-7963-1168SimoneManiniOrobix Srl.0000-0003-4350-659XLucaAntigaOrobix Srl.0000-0002-8367-227X10.21105/joss.00745https://doi.org/10.5281/zenodo.1253598Python, PowerShellhttps://joss.theoj.org/papers/10.21105/joss.00745.pdfC++, vascular modeling, image processing, medical imaging, image segmentation, computational geometry, surface extraction, CFD Meshing, hemodynamics, mesh generation, centerline