tag:joss.theoj.org,2005:/papers/tagged/HDF5Journal of Open Source Software2023-01-13T19:54:53ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/36792023-01-13T19:54:53Z2023-01-14T00:00:57ZRHEA: an open-source Reproducible Hybrid-architecture flow solver Engineered for Academiaacceptedv1.0.02022-06-24 17:38:19 UTC812023-01-13 19:54:53 UTC820234637LluísJofreDepartment of Fluid Mechanics, Universitat Politècnica de Catalunya · BarcelonaTech (UPC), Barcelona 08019, Spain0000-0003-2437-259XAhmedAbdellatifDepartment of Fluid Mechanics, Universitat Politècnica de Catalunya · BarcelonaTech (UPC), Barcelona 08019, Spain0000-0002-8810-7480GuillermoOyarzunDepartment of Computer Applications in Science & Engineering, Barcelona Supercomputing Center, Barcelona 08034, Spain0000-0001-9524-378210.21105/joss.04637https://doi.org/10.5281/zenodo.7525886JavaScripthttps://joss.theoj.org/papers/10.21105/joss.04637.pdfCompressible flow, Fluid mechanics, Ideal- & real-gas thermodynamics, Turbulence, C++, MPI, OpenACC, HDF5, YAMLtag:joss.theoj.org,2005:Paper/21462021-06-25T23:31:25Z2021-06-26T00:00:37Zh5fortran: object-oriented polymorphic Fortran interface for HDF5 file IOacceptedv3.4.12020-11-06 06:54:11 UTC622021-06-25 23:31:25 UTC620212842MichaelHirschBoston University0000-0002-1637-652610.21105/joss.02842https://doi.org/10.5281/zenodo.4946859Fortran, C, Python, Mesonhttps://joss.theoj.org/papers/10.21105/joss.02842.pdftag:joss.theoj.org,2005:Paper/15772020-09-02T00:00:00Z2022-08-25T16:35:40ZUtopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systemsacceptedlatest2020-03-07 19:20:06 UTC532020-09-02 00:00:00 UTC520202165LukasRiedelInstitute of Environmental Physics, Heidelberg University, Germany, Interdisciplinary Center for Scientific Computing, Heidelberg University, Germany, Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Heidelberg University, Germany0000-0002-4667-3652BenjaminHerdeanuInstitute of Environmental Physics, Heidelberg University, Germany, Heidelberg Graduate School for Physics, Heidelberg University, Germany0000-0001-6343-3004HaraldMackInstitute of Environmental Physics, Heidelberg University, Germany0000-0001-7787-9496YunusSevinchanInstitute of Environmental Physics, Heidelberg University, Germany0000-0003-3858-0904JulianWeningerDepartment of Biochemistry, University of Geneva, Switzerland10.21105/joss.02165https://doi.org/10.5281/zenodo.4011979C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02165.pdfComplex Systems, Agent-based Models, Modeling Framework, Computational Science, Docker, GitLab, HDF5, YAMLtag:joss.theoj.org,2005:Paper/16072020-08-23T00:00:00Z2022-08-25T16:41:55Zdantro: a Python package for handling, transforming, and visualizing hierarchically structured dataacceptedv0.132020-05-20 14:00:10 UTC522020-08-23 00:00:00 UTC520202316YunusSevinchanInstitute of Environmental Physics, Heidelberg University, Germany0000-0003-3858-0904BenjaminHerdeanuInstitute of Environmental Physics, Heidelberg University, Germany, Heidelberg Graduate School for Physics, Heidelberg University, Germany0000-0001-6343-3004JeremiasTraubInstitute of Environmental Physics, Heidelberg University, Germany0000-0001-8911-636510.21105/joss.02316https://doi.org/10.5281/zenodo.3986628Pythonhttps://joss.theoj.org/papers/10.21105/joss.02316.pdfYAML, computer simulations, research software, data analysis, plotting, data processing pipeline, configuration-based interfaces, hierarchical data structures, HDF5tag:joss.theoj.org,2005:Paper/9212019-06-10T11:52:03Z2021-02-15T11:32:25ZMPIFiles.jl: A Julia Package for Magnetic Particle Imaging Filesacceptedv0.5.02019-03-09 21:12:24 UTC382019-06-10 11:52:03 UTC420191331TobiasKnoppSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-1589-8517MartinMöddelSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-4737-7863FlorianGrieseSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-3309-9783FranziskaWernerSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of TechnologyPatrykSzwargulskiSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-2563-9006NadineGdaniecSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-5060-0683MarijaBobergSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-3419-748110.21105/joss.01331https://doi.org/10.5281/zenodo.3242352Juliahttps://joss.theoj.org/papers/10.21105/joss.01331.pdfMagnetic Particle Imaging, HDF5, MDFtag:joss.theoj.org,2005:Paper/7232018-12-17T00:00:00Z2021-02-15T11:32:48ZHickle: A HDF5-based python pickle replacementacceptedv3.2.22018-11-13 05:09:27 UTC322018-12-17 00:00:00 UTC320181115DannyC.PriceDepartment of Astronomy, University of California Berkeley, Berkeley CA 94720, Centre for Astrophysics & Supercomputing, Swinburne University of Technology, Hawthorn, VIC 3122, Australia0000-0003-2783-1608Ellertvan der VeldenCentre for Astrophysics & Supercomputing, Swinburne University of Technology, Hawthorn, VIC 3122, Australia0000-0002-1559-9832SébastienCellesThermal Science and Energy Department, Institut Universitaire de Technologie de Poitiers - Université de Poitiers, France0000-0001-9987-4338PieterT.EendebakQuTech, Delft University of Technology, P.O. Box 5046, 2600 GA Delft, The Netherlands, Netherlands Organisation for Applied Scientific Research (TNO), P.O. Box 155, 2600 AD Delft, The Netherlands0000-0001-7018-1124MichaelM.McKernsInstitute for Advanced Computational Science, Stony Brook University, Stony Brook, NY 11794-52500000-0001-8342-3778EbenM.OlsonDepartment of Laboratory Medicine, Yale University, New Haven CT 06510 USAColinRaffelGoogle Brain, Mountain View, CA, 94043BairenYiThe Hong Kong University of Science and TechnologyElliottAshETH Zurich10.21105/joss.01115https://doi.org/10.5281/zenodo.2345649Pythonhttps://joss.theoj.org/papers/10.21105/joss.01115.pdfastronomytag:joss.theoj.org,2005:Paper/3752018-02-20T11:17:14Z2021-02-15T11:33:38Zh5preserve: Thin wrapper around h5py, inspired by camelacceptedv0.15.02018-02-07 06:03:41 UTC222018-02-20 11:17:14 UTC32018581JamesTocknellMacquarie University, Sydney, Australia0000-0001-6637-692210.21105/joss.00581https://doi.org/10.5281/zenodo.1179292Pythonhttps://joss.theoj.org/papers/10.21105/joss.00581.pdfhdf5