JOSS Papers: Genomics

All Papers
2510
 Published Papers
2241
 Active Papers
269
published Published over 1 year ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Python
@milnus
10.21105/joss.04369
published Published over 1 year ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published almost 2 years ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published almost 2 years ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published almost 2 years ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published about 2 years ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published about 2 years ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published over 2 years ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
published Published over 2 years ago

Generating fragment density plots in R/Bioconductor with VplotR

R
@js2264
10.21105/joss.03009
published Published over 2 years ago

REGENS: an open source Python package for simulating realistic autosomal genotypes

Python
@greggj2016
10.21105/joss.02743
Displaying papers 11 - 20 of 59 in total

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ISSN 2475-9066