published Published over 1 year ago
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs
Python
published Published over 1 year ago
ROCK: digital normalization of whole genome sequencing data
M4 C++
published Published almost 2 years ago
Rasusa: Randomly subsample sequencing reads to a specified coverage
Rust
published Published almost 2 years ago
Bam-readcount - rapid generation of basepair-resolution sequence metrics
R
published Published almost 2 years ago
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Ruby C++
published Published about 2 years ago
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets
Python Jupyter Notebook
published Published about 2 years ago
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees
Python JavaScript
published Published over 2 years ago
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data
Perl Python Prolog
published Published over 2 years ago
Generating fragment density plots in R/Bioconductor with VplotR
R
published Published over 2 years ago