tag:joss.theoj.org,2005:/papers/tagged/EMBLJournal of Open Source Software2022-04-12T18:17:48ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/33072022-04-12T18:17:48Z2022-04-13T00:01:14Zswift-emulator: A Python package for emulation of simulated scaling relationsacceptedv1.0.02022-01-28 15:50:06 UTC722022-04-12 18:17:48 UTC720224240RoiKugelLeiden Observatory, Leiden University, PO Box 9513, NL-2300 RA Leiden, The Netherlands0000-0003-0862-8639JoshBorrowDepartment of Physics, Kavli Institute for Astrophysics and Space Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA0000-0002-1327-192110.21105/joss.04240https://doi.org/10.5281/zenodo.6447216Pythonhttps://joss.theoj.org/papers/10.21105/joss.04240.pdfastronomy, Simulations, Cosmology, Machine Learningtag:joss.theoj.org,2005:Paper/19182020-09-26T12:21:02Z2021-02-15T11:30:12Zemba: R package for analysis and visualization of biomarkers in boolean model ensemblesacceptedv0.1.62020-07-28 19:45:33 UTC532020-09-26 12:21:02 UTC520202583JohnZobolasDepartment of Biology, Norwegian University of Science and Technology (NTNU), Trondheim, Norway, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0002-3609-8674MartinKuiperDepartment of Biology, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0002-1171-9876ÅsmundFlobakDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway, The Cancer Clinic, St. Olav’s Hospital, Trondheim, Norway0000-0002-3357-425X10.21105/joss.02583https://doi.org/10.5281/zenodo.4043085Rhttps://joss.theoj.org/papers/10.21105/joss.02583.pdfboolean networks, logical modeling, biomarkers, mechanistic models, drug synergies, anti-cancer drug combinations, druglogicstag:joss.theoj.org,2005:Paper/8292019-06-10T11:40:14Z2021-02-15T11:32:37ZModel dispersion with PRISM; an alternative to MCMC for rapid analysis of modelsacceptedv1.0.02019-01-25 02:33:28 UTC382019-06-10 11:40:14 UTC420191229Ellertvan der VeldenCentre for Astrophysics and Supercomputing, Swinburne University of Technology, PO Box 218, Hawthorn, VIC 3122, Australia, ARC Centre of Excellence for All Sky Astrophysics in 3 Dimensions (ASTRO 3D)0000-0002-1559-983210.21105/joss.01229https://doi.org/10.5281/zenodo.2572736Pythonhttps://joss.theoj.org/papers/10.21105/joss.01229.pdfPython 3, model analysis, emulation, history matching, Bayesian, MCMCtag:joss.theoj.org,2005:Paper/9002019-02-26T00:50:22Z2021-02-15T11:32:29ZEcological Metadata as Linked Dataaccepted0.2.02019-02-23 05:44:02 UTC342019-02-26 00:50:22 UTC420191276CarlBoettigerUniversity of California, Berkeley0000-0002-1642-628X10.21105/joss.01276https://doi.org/10.5281/zenodo.2575926R, JSONiqhttps://joss.theoj.org/papers/10.21105/joss.01276.pdflinked data, EML, JSON-LD, RDF, Ecologytag:joss.theoj.org,2005:Paper/612016-10-06T00:00:00Z2021-02-15T11:34:25ZGFF3toEMBL: Preparing annotated assemblies for submission to EMBLacceptedv1.1.02016-09-21 13:16:29 UTC62016-10-06 00:00:00 UTC1201680AndrewJ.PagePathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6919-6062SaschaSteinbissPathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2151-0574BenTaylorPathogen Informatics, Wellcome Trust Sanger InstituteTorstenSeemannUniversity of Melbourne0000-0001-6046-610XJacquelineA.KeanePathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2021-186310.21105/joss.00080https://doi.org/10.6084/m9.figshare.3988815.v1Pythonhttps://joss.theoj.org/papers/10.21105/joss.00080.pdfbioinformatics, annotation, EMBL