tag:joss.theoj.org,2005:/papers/tagged/De%20novo%20sequence%20assemblyJournal of Open Source Software2016-12-05T00:00:00ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/1122016-12-05T00:00:00Z2021-02-15T11:34:22ZMultilocus sequence typing by blast from de novo assemblies against PubMLSTacceptedv2.1.16309102016-11-04 11:47:34 UTC82016-12-05 00:00:00 UTC12016118AndrewJ.PagePathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6919-6062BenTaylorPathogen Informatics, Wellcome Trust Sanger InstituteJacquelineA.KeanePathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2021-186310.21105/joss.00118https://doi.org/10.6084/m9.figshare.4285097.v1Perlhttps://joss.theoj.org/papers/10.21105/joss.00118.pdfbioinformatics, MLST, multilocus sequence typing, blast, de novo assembly, bacteriatag:joss.theoj.org,2005:Paper/1152016-11-17T00:00:00Z2022-11-03T17:10:09ZRAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequencesacceptedv1.12016-11-11 00:02:49 UTC72016-11-17 00:00:00 UTC12016116ReneL.WarrenBC Cancer Agency, Genome Sciences Centre, Vancouver, BC, Canada0000-0002-9890-229310.21105/joss.00116https://doi.org/10.5281/zenodo.167092Perlhttps://joss.theoj.org/papers/10.21105/joss.00116.pdfDe novo sequence assembly, Genome scaffolding, Automated genome finishing, LINKS, RAILS