tag:joss.theoj.org,2005:/papers/tagged/Data%20qualityJournal of Open Source Software2024-03-28T11:28:09ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/45762024-03-28T11:28:09Z2024-03-29T00:01:23ZsimChef: High-quality data science simulations in Racceptedv0.0.32023-07-03 18:14:27 UTC952024-03-28 11:28:09 UTC920246156JamesDuncanGraduate Group in Biostatistics, University of California, Berkeley, United States of America0000-0003-3297-681XTiffanyTangDepartment of Statistics, University of California, Berkeley, United States of America0000-0002-8079-6867CorrineF.ElliottDepartment of Statistics, University of California, Berkeley, United States of America0000-0001-7935-9945PhilippeBoileauGraduate Group in Biostatistics, University of California, Berkeley, United States of America0000-0002-4850-2507BinYuGraduate Group in Biostatistics, University of California, Berkeley, United States of America, Department of Statistics, University of California, Berkeley, United States of America, Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, United States of America, Center for Computational Biology, University of California, Berkeley, United States of America0000-0002-8888-406010.21105/joss.06156https://doi.org/10.5281/zenodo.10845638R, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06156.pdfsimulations, data sciencetag:joss.theoj.org,2005:Paper/42822023-10-23T10:25:02Z2023-10-24T00:01:06ZQuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Dataaccepted1.32023-03-06 22:06:16 UTC902023-10-23 10:25:02 UTC820235313ManavalanGajapathyCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8606-0113BrandonM.WilkCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4110-2324ElizabethA.WortheyCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0003-4083-776410.21105/joss.05313https://doi.org/10.5281/zenodo.10002036Jinja, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05313.pdfsnakemake, quality control, genome sequencing, exome sequencing, QC review, multiqc, singularity, bam, vcftag:joss.theoj.org,2005:Paper/41752023-05-08T13:22:38Z2023-05-17T09:12:44ZLaMa: a thematic labelling web applicationacceptedv1.0.02023-01-23 10:24:35 UTC852023-05-08 13:22:38 UTC820235135VictoriaBogachenkovaSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsEduardoCostaMartinsSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsJarlJansenSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsAna-MariaOlteniceanuSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsBartjanHenkemansSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsChinnoLavinSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsLinhNguyenMcGill University, Montreal, CanadaTheaBradleySoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsVeerleFürstSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsHossainMuhammadMuctadirSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-2090-4766Markvan den BrandSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0003-3529-6182LoekCleophasSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-7221-3676AlexanderSerebrenikSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-1418-009510.21105/joss.05135https://doi.org/10.5281/zenodo.7866236Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05135.pdfLabelling, Qualitative data analysis, Thematic analysistag:joss.theoj.org,2005:Paper/40832022-12-26T13:59:43Z2022-12-27T00:00:49Zdaiquiri: Data Quality Reporting for Temporal Datasetsacceptedv1.0.32022-12-13 14:33:14 UTC802022-12-26 13:59:43 UTC720225034T.PhuongQuanUniversity of Oxford, UK0000-0001-8566-181710.21105/joss.05034https://doi.org/10.5281/zenodo.7405432Rhttps://joss.theoj.org/papers/10.21105/joss.05034.pdfdata quality, time series, reproducible research, initial data analysistag:joss.theoj.org,2005:Paper/36862022-12-13T22:19:24Z2022-12-16T16:04:22Zdtrackr: An R package for tracking the provenance of dataaccepted0.2.32022-06-28 15:30:26 UTC802022-12-13 22:19:24 UTC720224707RobertChallenEngineering Mathematics, University of Bristol, Bristol, United Kingdom, College of Engineering, Mathematics and Physical Sciences, University of Exeter, Devon, United Kingdom0000-0002-5504-776810.21105/joss.04707https://doi.org/10.5281/zenodo.7433514Rhttps://joss.theoj.org/papers/10.21105/joss.04707.pdfdata pipeline, consort diagram, strobe statement, data quality, reproducible researchtag:joss.theoj.org,2005:Paper/32412022-03-03T18:45:08Z2022-03-04T00:01:09ZTransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualizationacceptedv0.2.72021-12-09 11:12:49 UTC712022-03-03 18:45:08 UTC720224021QingYuKey Laboratory of Road and Traffic Engineering of the Ministry of Education, Tongji University, 4800 Cao’an Road, Shanghai 201804, People’s Republic of China0000-0003-2513-2969JianYuanKey Laboratory of Road and Traffic Engineering of the Ministry of Education, Tongji University, 4800 Cao’an Road, Shanghai 201804, People’s Republic of China0000-0002-7202-094610.21105/joss.04021https://doi.org/10.5281/zenodo.6236507Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04021.pdftransportation, spatio-temporal data, geospatial data, GIS, data quality analysis, data pre-processing, data visualization, taxi GPS data, bus GPS data, bike sharing datatag:joss.theoj.org,2005:Paper/28882021-12-10T17:52:19Z2021-12-19T12:03:28ZTaguette: open-source qualitative data analysisaccepted1.0.02021-07-17 19:18:55 UTC682021-12-10 17:52:19 UTC620213522RémiRampinIndependent Researcher0000-0002-0524-2282VickyRampinIndependent Researcher0000-0003-4298-168X10.21105/joss.03522https://doi.org/10.5281/zenodo.5574555Python, Makohttps://joss.theoj.org/papers/10.21105/joss.03522.pdfqualitative, qualitative data analysis, qual, document, text, tagging, tags, coding, highlights, notes, text-analysis, highlighting, caqdas, python, SQLitetag:joss.theoj.org,2005:Paper/22102021-05-20T08:14:33Z2021-05-21T00:00:35ZMagicwand: A platform to provide high-quality, reliable, and reproducible data sets for low-and-slow DDoS attacks.acceptedv1.0.02020-11-30 19:18:42 UTC612021-05-20 08:14:33 UTC620213032BanjoObayomiTwo Six LabsChristopherH.ToddTwo Six LabsLucasCadalzoTwo Six LabsDavidKillianTwo Six LabsAnthonyC.WongUnaffiliated10.21105/joss.03032https://doi.org/10.5281/zenodo.4774301Pythonhttps://joss.theoj.org/papers/10.21105/joss.03032.pdfCybersecurity, Network Traffic, Distributed Denial of Service, DDoS, LSDDoS, Machine Learningtag:joss.theoj.org,2005:Paper/24352021-05-19T19:44:28Z2021-05-20T08:26:21ZdataquieR: assessment of data quality in epidemiological researchacceptedv1.0.52021-03-01 14:36:57 UTC612021-05-19 19:44:28 UTC620213093AdrianRichterInstitute for Community Medicine, University Medicine Greifswald0000-0002-3372-2021CarstenOliverSchmidtInstitute for Community Medicine, University Medicine Greifswald0000-0001-5266-9396MarkusKrügerInstitute for Community Medicine, University Medicine Greifswald0000-0003-0550-5668StephanStruckmannInstitute for Community Medicine, University Medicine Greifswald0000-0002-8565-796210.21105/joss.03093https://doi.org/10.5281/zenodo.4767836Rhttps://joss.theoj.org/papers/10.21105/joss.03093.pdfepidemiology, metadata, data qualitytag:joss.theoj.org,2005:Paper/16212021-04-16T18:17:11Z2021-04-17T15:55:53ZSneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read dataacceptedv0.9.102020-05-20 18:19:53 UTC602021-04-16 18:17:11 UTC620212334TaylorGriswoldEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USACurtisKapsakEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USA, Weems Design Studio, Inc., Suwanee, GA, USA0000-0002-8735-1190JessicaC.ChenEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USAHenkC. denBakkerCenter for Food Safety, University of Georgia, Griffin, GA, USA0000-0002-4086-1580GrantWilliamsEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USAAlyssaKelleyWeems Design Studio, Inc., Suwanee, GA, USA, Waterborne Disease Prevention Branch (WDPB), Centers for Disease Control and Prevention, Atlanta, GA, USAEshawVidyaprakashEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USA, IHRC, Atlanta, GA, USALeeS.KatzEnteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USA, Center for Food Safety, University of Georgia, Griffin, GA, USA0000-0002-2533-916110.21105/joss.02334https://doi.org/10.5281/zenodo.4657026Perl, Python, Prologhttps://joss.theoj.org/papers/10.21105/joss.02334.pdfQA/QC