JOSS Papers: Computational Biology

All Papers
4091
 Published Papers
3711
 Active Papers
380
published Published 10 days ago

scphylo-tools: A Python toolkit for single-cell tumor phylogenetic analysis

Python R
@faridrashidi
10.21105/joss.10589
published Published 3 months ago

The Pulmonary Agent-based Infection simulator (PAI): A Multi-Scale Agent-Based Model of Pulmonary Host-Pathogen Interactions

C++ Python
@deassisinfo
10.21105/joss.10245
published Published 12 months ago

Improving reproducibility of cheminformatics workflows with chembl-downloader

Jupyter Notebook Python
@cthoyt
10.21105/joss.08844
published Published almost 2 years ago

APackOfTheClones: Visualization of clonal expansion with circle packing

R C++
@Qile0317
10.21105/joss.06868
published Published almost 2 years ago

anndata: Access and store annotated data matrices

Python
@falexwolf
10.21105/joss.04371
published Published about 2 years ago

scribl: A system for the semantic capture of relationships in biological literature

Python
@alexlancaster
10.21105/joss.06645
published Published over 2 years ago

cellanneal: A user-friendly deconvolution software for transcriptomics data

Python
@libuchauer
10.21105/joss.05610
published Published almost 3 years ago

BASICO: A simplified Python interface to COPASI

Python
@fbergmann
10.21105/joss.05553
published Published over 3 years ago

mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra

Python
@WSDeWitt
10.21105/joss.05227
published Published over 3 years ago

simcardems: A FEniCS-based cardiac electro-mechanics solver

Python
@finsberg
10.21105/joss.04753
Displaying papers 1 - 10 of 19 in total

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ISSN 2475-9066