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Mesa 3: Agent-based modeling with Python in 2025
Python Jupyter Notebook
published Published about 2 months ago
ExaDEM: a HPC application based on exaNBody targeting scalable DEM simulations with complex particle shapes
Python C++ Gnuplot
published Published 4 months ago
RNMC: kinetic Monte Carlo implementations for complex reaction networks
C++ C Nix
published Published 5 months ago
PhyloX: A Python package for complete phylogenetic network workflows
Python
published Published 5 months ago
PANINIpy: Package of Algorithms for Nonparametric Inference with Networks In Python
Python Jupyter Notebook
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nimCSO: A Nim package for Compositional Space Optimization
Nim Python
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OpenMD: A parallel molecular dynamics engine for complex systems and interfaces
Python C++ C
published Published 11 months ago
MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms
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STReNGTHS, a Python package to model and simulate complex reaction-diffusion systems
Python C++
published Published about 1 year ago