tag:joss.theoj.org,2005:/papers/tagged/BODJournal of Open Source Software2023-12-04T10:49:39ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/45282023-12-04T10:49:39Z2023-12-05T00:00:59ZBidsme: expandable BIDS-ifier of brain imagery datasetsaccepted1.4.0.post42023-06-06 14:11:38 UTC922023-12-04 10:49:39 UTC820235575NikitaBeliyGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0009-0002-0830-3279CamilleGuilleminGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-5377-7417EmelinePommierTélécom Physique Strasbourg, Université de Strasbourg, FranceGrégoryHammadGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0003-1083-3869ChristophePhillipsGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-4990-425X10.21105/joss.05575https://doi.org/10.5281/zenodo.10185300Pythonhttps://joss.theoj.org/papers/10.21105/joss.05575.pdfBIDS, data management, standardizationtag:joss.theoj.org,2005:Paper/24822021-08-28T16:46:52Z2021-08-29T14:48:34ZBIDSonym: a BIDS App for the pseudo-anonymization of neuroimaging datasetsacceptedv0.0.42021-03-11 19:34:16 UTC642021-08-28 16:46:52 UTC620213169PeerHerholzNeuroDataScience-Origami lab, McConnell Brain Imaging Centre, The Neuro (Montreal Neurological Institute-Hospital), Faculty of Medicine, McGill University, Montreal, Quebec, Canada0000-0002-9840-6257RitaMarieLudwigUniversity of Oregon, Eugene, United States0000-0002-4296-6167Jean-BaptistePolineNeuroDataScience-Origami lab, McConnell Brain Imaging Centre, The Neuro (Montreal Neurological Institute-Hospital), Faculty of Medicine, McGill University, Montreal, Quebec, Canada0000-0002-9794-749X10.21105/joss.03169https://doi.org/10.5281/zenodo.5301625Pythonhttps://joss.theoj.org/papers/10.21105/joss.03169.pdfdata pseudo-anonymization - neuroimaging datasets - de-identification - data sharingtag:joss.theoj.org,2005:Paper/18222020-12-22T21:05:40Z2021-02-15T11:30:22ZDetectorChecker: analyzing patterns of defects in detector screensaccepted1.0.82020-07-03 16:32:48 UTC562020-12-22 21:05:40 UTC520202474JuliaA.BrettschneiderDepartment of Statistics, University of Warwick, Coventry, United Kingdom, The Alan Turing Institute, London, United Kingdom0000-0003-1763-466XOscarT.GilesThe Alan Turing Institute, London, United KingdomWilfridS.KendallDepartment of Statistics, University of Warwick, Coventry, United Kingdom, The Alan Turing Institute, London, United Kingdom0000-0001-9799-3480TomasLazauskasThe Alan Turing Institute, London, United Kingdom10.21105/joss.02474https://doi.org/10.5281/zenodo.4312870Rhttps://joss.theoj.org/papers/10.21105/joss.02474.pdfXCT, bad pixel map, defective pixels, spatial statisticstag:joss.theoj.org,2005:Paper/16092020-09-24T18:11:16Z2021-02-15T11:30:48ZNetworkSedimentTransporter: A Landlab component for bed material transport through river networksaccepted2.12020-05-20 14:35:45 UTC532020-09-24 18:11:16 UTC520202341AllisonM.PfeifferWestern Washington University, Geology Department0000-0002-3974-132XKatherineR.BarnhartUniversity of Colorado at Boulder, Department of Geological Sciences, University of Colorado at Boulder, Cooperative Institute for Research in Environmental Sciences, Present affiliation: U.S. Geological Survey, Landslide Hazards Program, 1711 Illinois St., Golden, CO 804010000-0001-5682-455XJonathanA.CzubaVirginia Tech, Department of Biological Systems Engineering and The Global Change Center0000-0002-9485-2604EricW. h.HuttonUniversity of Colorado at Boulder, Community Surface Dynamics Modeling System Integration Facility0000-0002-5864-645910.21105/joss.02341https://doi.org/10.5281/zenodo.4044683Pythonhttps://joss.theoj.org/papers/10.21105/joss.02341.pdfLandlabtag:joss.theoj.org,2005:Paper/13182019-12-18T14:40:14Z2021-02-15T11:31:25ZMNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysisacceptedv0.32019-11-04 17:26:29 UTC442019-12-18 14:40:14 UTC420191896StefanAppelhoffCenter for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877MatthewSandersonDepartment of Cognitive Sciences, Macquarie University, Sydney, Australia0000-0002-4645-8979TeonL.BrooksMozilla0000-0001-7344-3230Marijnvan VlietDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0002-6537-6899RomainQuentinHuman Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 208920000-0001-7659-3605ChrisHoldgrafUC Berkeley, Project Jupyter0000-0002-2391-0678MaximilienChaumonInstitut du cerveau et de la moelle épinière (ICM), Paris, France0000-0001-9664-8861EzequielMikulanDepartment of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy0000-0001-7259-6120KambizTavabiInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-1881-892XRichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798DominikWelkeMax-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany0000-0002-5529-1998ClemensBrunnerInstitute of Psychology, University of Graz, Austria0000-0002-6030-2233AlexanderP.RockhillUniversity of Oregon, Eugene OR, USA0000-0003-3868-7453EricLarsonInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-4782-5360AlexandreGramfortUniversité Paris-Saclay, Inria, CEA, Palaiseau, France0000-0001-9791-4404MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA0000-0002-3199-902710.21105/joss.01896https://doi.org/10.5281/zenodo.3580273Pythonhttps://joss.theoj.org/papers/10.21105/joss.01896.pdfBIDS, MNE, neuroimaging, MEG, EEG, iEEGtag:joss.theoj.org,2005:Paper/9062019-08-12T18:08:03Z2021-02-15T11:32:28ZPyBIDS: Python tools for BIDS datasetsaccepted0.8.02019-02-28 17:47:22 UTC402019-08-12 18:08:03 UTC420191294TalYarkoniUniversity of Texas at Austin0000-0002-6558-5113ChristopherJ.MarkiewiczStanford University0000-0002-6533-164XAlejandrode la VegaUniversity of Texas at Austin0000-0001-9062-3778KrzysztofJ.GorgolewskiStanford University0000-0003-3321-7583TaylorSaloFlorida International University0000-0001-9813-3167YaroslavO.HalchenkoDartmouth College0000-0003-3456-2493QuintenMcNamaraUniversity of Texas at AustinKristaDeStasioUniversity of Oregon0000-0002-3959-9060Jean-BaptistePolineMcGill University0000-0002-9794-749XDmitryPetrovUniversity of Southern CaliforniaValérieHayot-SassonConcordia University0000-0002-4830-4535DylanM.NielsonNational Institute of Mental Health0000-0003-4613-6643JohanCarlinMRC Cognition and Brain Sciences Unit0000-0003-0933-1239GregoryKiarMontreal Neurological Institute and Hospital0000-0001-8915-496XKirstieWhitakerAlan Turing Institute0000-0001-8498-4059ElizabethDuPreMontreal Neurological Institute and Hospital0000-0003-1358-196XAdinaWagnerOtto-von-Guericke University Magdeburg0000-0003-2917-3450LeeS.TirrellCorticoMetrics LLC0000-0001-9393-8361MainakJasTélécom ParisTech, France0000-0002-3199-9027MichaelHankeOtto-von-Guericke University Magdeburg0000-0001-6398-6370RussellA.PoldrackStanford University0000-0001-6755-0259OscarEstebanStanford University0000-0001-8435-6191StefanAppelhoffMax Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877ChrisHoldgrafUniversity of California at Berkeley0000-0002-2391-0678IslaStadenQueen Mary University London0000-0002-0795-1154BertrandThirionINRIA0000-0001-5018-7895DaveF.KleinschmidtRutgers University0000-0002-7442-2762JohnA.LeeNational Institute of Mental Health0000-0001-5884-4247MatteoVisconti Oleggiodi CastelloUniversity of California at Berkeley0000-0001-7931-5272MichaelP.NotterUniversity of Lausanne0000-0002-5866-047XRossBlairStanford University0000-0003-3007-105610.21105/joss.01294https://doi.org/10.5281/zenodo.3333492Pythonhttps://joss.theoj.org/papers/10.21105/joss.01294.pdfBIDS, neuroimagingtag:joss.theoj.org,2005:Paper/10342019-07-02T10:33:47Z2021-02-15T11:32:05ZfitODBOD: An R Package to Model Binomial Outcome Data using Binomial Mixture and Alternate Binomial Distributions.acceptedv1.4.02019-06-13 08:51:25 UTC392019-07-02 10:33:47 UTC420191505AmalanMahendranDepartment of Statistics and Computer Science, Faculty of Science, University of Peradeniya.0000-0002-0643-9052PushpakanthieWijekoonDepartment of Statistics and Computer Science, Faculty of Science, University of Peradeniya.0000-0003-4242-101710.21105/joss.01505https://doi.org/10.5281/zenodo.3265356Rhttps://joss.theoj.org/papers/10.21105/joss.01505.pdffitODBOD, BOD, Over-dispersion, FBMD, ABDtag:joss.theoj.org,2005:Paper/8252019-02-28T04:47:11Z2021-02-15T11:32:37ZBedparse: feature extraction from BED filesacceptedv0.2.02019-01-22 15:47:36 UTC342019-02-28 04:47:11 UTC420191228TommasoLeonardiThe Gurdon Institute, University of Cambridge, Cambridge, UK, Center for Genomic Science IIT\@SEMM, Istituto Italiano di Tecnologia (IIT), Milan, Italy0000-0002-4449-186310.21105/joss.01228https://doi.org/10.5281/zenodo.2578820Pythonhttps://joss.theoj.org/papers/10.21105/joss.01228.pdfBioinformatics, Genomics, BED formattag:joss.theoj.org,2005:Paper/8132019-02-11T23:18:45Z2021-02-15T11:32:39ZThe Biddy BDD packageacceptedv1.8.22019-01-15 09:37:54 UTC342019-02-11 23:18:45 UTC420191189RobertMeolicFaculty of Electrical Engineering and Computer Science, University of Maribor0000-0003-3395-122710.21105/joss.01189https://doi.org/10.5281/zenodo.2561641C, Tcl, C++, HyPhyhttps://joss.theoj.org/papers/10.21105/joss.01189.pdfBoolean algebra, unate cube set algebra, binary decision diagram, zero-suppressed binary decision diagram, formal methods, free software