tag:joss.theoj.org,2005:/papers/tagged/BLASTJournal of Open Source Software2023-02-13T13:30:07ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/38312023-02-13T13:30:07Z2023-02-14T00:00:51ZenetLTS: Robust and Sparse Methods for High Dimensional Linear, Binary, and Multinomial Regressionaccepted1.1.02022-08-23 09:31:03 UTC822023-02-13 13:30:07 UTC820234773FatmaSevincKurnazDepartment of Statistics, Yildiz Technical University, Istanbul, Turkey0000-0002-5958-7366PeterFilzmoserInstitute of Statistics and Mathematical Methods in Economics, TU Wien, Vienna, Austria0000-0002-8014-468210.21105/joss.04773https://doi.org/10.5281/zenodo.7598948Rhttps://joss.theoj.org/papers/10.21105/joss.04773.pdfRobust regression, Elastic net, outlier detectiontag:joss.theoj.org,2005:Paper/34372022-10-11T16:37:07Z2022-10-12T06:58:04ZMechkit: A continuum mechanics toolkit in Pythonacceptedv0.3.92022-03-23 15:39:34 UTC782022-10-11 16:37:07 UTC720224389JulianKarlBauerInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-4931-5869PhilippLotharKinonInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-4128-5124JonasHundDepartment of Structural Engineering, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0003-2140-4285LisaLatussekInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-1093-737XNilsMeyerInstitute of Vehicle System Technology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0001-6291-6741ThomasBöhlkeChair for Continuum Mechanics, Institute of Engineering Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0001-6884-053010.21105/joss.04389https://doi.org/10.5281/zenodo.7185691Pythonhttps://joss.theoj.org/papers/10.21105/joss.04389.pdfmechanics, continuum-mechanics, mechanics-of-materials, linear elasticity, fiber orientation tensors, notationtag:joss.theoj.org,2005:Paper/35172022-07-05T13:07:45Z2022-07-06T00:00:56Zelwaspatid: A Python package to compute space-time diagrams for the propagation of elastic waves in 1D rodsaccepted2.0.12022-04-26 09:50:44 UTC752022-07-05 13:07:45 UTC720224418DenisBrizardUniv Lyon, Univ Gustave Eiffel, Univ Claude Bernard Lyon 1, LBMC UMR_T 9406, F-69622 Lyon, France0000-0003-2264-713110.21105/joss.04418https://doi.org/10.5281/zenodo.6777968Pythonhttps://joss.theoj.org/papers/10.21105/joss.04418.pdfmechanics, elastic wave propagation, space-time diagramtag:joss.theoj.org,2005:Paper/27432022-07-04T16:31:16Z2022-07-05T00:00:39ZTsgFEM: Tensegrity Finite Element Methodacceptedv1.12021-06-09 07:07:34 UTC752022-07-04 16:31:16 UTC720223390ShuoMaCollege of Civil Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang, China0000-0003-3789-2893MuhaoChenDepartment of Aerospace Engineering, Texas A&M University, College Station, Texas, USA0000-0003-1812-6835RobertE.SkeltonDepartment of Aerospace Engineering, Texas A&M University, College Station, Texas, USA0000-0001-6503-911510.21105/joss.03390https://doi.org/10.5281/zenodo.6729686MATLABhttps://joss.theoj.org/papers/10.21105/joss.03390.pdfTensegrity systems, Multibody dynamics, Flexible structures, Prestressable structures, Finite element method, Linearized tensegrity dynamics, Elastic and plastic deformationtag:joss.theoj.org,2005:Paper/26062021-07-28T17:56:07Z2021-07-29T00:03:16ZRENT: A Python Package for Repeated Elastic Net Feature Selectionaccepted0.0.12021-04-29 19:17:35 UTC632021-07-28 17:56:07 UTC620213323AnnaJenulDepartment of Data Science, Norwegian University of Life Sciences0000-0002-6919-3483StefanSchrunnerDepartment of Data Science, Norwegian University of Life Sciences0000-0003-1327-4855BaoNgocHuynhDepartment of Physics, Norwegian University of Life Sciences0000-0001-5210-132XOliverTomicDepartment of Data Science, Norwegian University of Life Sciences0000-0003-1595-996210.21105/joss.03323https://doi.org/10.5281/zenodo.5140349Pythonhttps://joss.theoj.org/papers/10.21105/joss.03323.pdffeature selectiontag:joss.theoj.org,2005:Paper/17002020-11-25T09:55:26Z2021-02-15T11:30:36ZALVA: An adaptive MATLAB package for layered viscoelastic analysisacceptedv1.0.02020-05-29 08:43:52 UTC552020-11-25 09:55:26 UTC520202548AsmusSkarDepartment of Civil Engineering, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark0000-0003-3176-791XSebastianAndersenDepartment of Civil Engineering, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark0000-0002-6397-791410.21105/joss.02548https://doi.org/10.5281/zenodo.4289275Matlabhttps://joss.theoj.org/papers/10.21105/joss.02548.pdfMATLAB, Layered Elastic Theory, Linear Viscoelasticity, Pavement analysistag:joss.theoj.org,2005:Paper/18482020-10-10T17:18:47Z2021-02-15T11:30:17ZGENRE (GPU Elastic-Net REgression): A CUDA-Accelerated Package for Massively Parallel Linear Regression with Elastic-Net Regularizationacceptedv1.02020-07-10 23:13:10 UTC542020-10-10 17:18:47 UTC520202644ChristopherKhanVanderbilt University0000-0003-3201-3423BrettByramVanderbilt University0000-0003-3693-145910.21105/joss.02644https://doi.org/10.5281/zenodo.4076520Matlab, Cudahttps://joss.theoj.org/papers/10.21105/joss.02644.pdfCUDA, GPU computing, Cyclic coordinate descent, Elastic-net regularization, Linear regressiontag:joss.theoj.org,2005:Paper/14742020-07-28T18:36:12Z2021-02-15T11:31:01ZTamaas: a library for elastic-plastic contact of periodic rough surfacesaccepted2.0.02020-02-06 13:20:42 UTC512020-07-28 18:36:12 UTC520202121LucasFrérotCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland, United States.0000-0002-4138-1052GuillaumeAnciauxCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-9624-5621ValentineReyUniversité de Nantes Sciences et Techniques, Nantes, France0000-0003-1019-1819SonPham-BaCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-3451-7297Jean-FrançoisMolinariCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1728-184410.21105/joss.02121https://doi.org/10.5281/zenodo.3961890Python, C++https://joss.theoj.org/papers/10.21105/joss.02121.pdfcontact, rough surface, plasticitytag:joss.theoj.org,2005:Paper/13792020-03-01T23:43:39Z2021-02-15T11:31:19ZPyglmnet: Python implementation of elastic-net regularized generalized linear modelsacceptedv1.12019-11-26 03:54:41 UTC472020-03-01 23:43:39 UTC520201959MainakJasMassachusetts General Hospital, Harvard Medical School0000-0002-3199-9027TitipatAchakulvisutUniversity of Pennsylvania0000-0002-2124-2979AidIdrizovićLoyola UniversityDanielAcunaUniversity of SyracuseMatthewAntalekNorthwestern UniversityViniciusMarquesLoyola UniversityTommyOdlandSonat ConsultingRaviPrakashGargNorthwestern UniversityMayankAgrawalPrinceton UniversityYuUmegakiNTT DATA Mathematical Systems IncPeterFoley6050000-0002-0304-7213HugoFernandesRockets of Awesome0000-0002-0168-4104DrewHarrisEpoch CapitalBeibinLiUniversity of WashingtonOlivierPietersIDLab-AIRO -- Ghent University -- imec, Research Institute for Agriculture, Fisheries and Food0000-0002-5473-4849ScottOttersonClean Power ResearchGiovanniDe ToniUniversity of Trento0000-0002-8387-9983ChrisRodgersColumbia University0000-0003-1762-3450EvaDyerGeorgia TechMattiHamalainenMassachusetts General Hospital, Harvard Medical SchoolKonradKordingUniversity of PennsylvaniaPavanRamkumarSystem1 Biosciences Inc0000-0001-7450-072710.21105/joss.01959https://doi.org/10.5281/zenodo.3686564Pythonhttps://joss.theoj.org/papers/10.21105/joss.01959.pdfglm, machine-learning, lasso, elastic-net, group-lassotag:joss.theoj.org,2005:Paper/9632019-12-18T15:30:17Z2021-02-15T11:32:17Z“Blaster” – a graphical user interface for common sequence analysis toolsacceptedv.1.2.42019-04-13 15:55:39 UTC442019-12-18 15:30:17 UTC420191411StefanieLueckLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0003-0536-835XDimitarDouchkovLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0001-6603-493010.21105/joss.01411https://doi.org/10.5281/zenodo.3576574Pythonhttps://joss.theoj.org/papers/10.21105/joss.01411.pdfsequences, fasta, clustalw, blast, bowtie, bioinformatic, GUI, Windows