tag:joss.theoj.org,2005:/papers/tagged/AutoMLJournal of Open Source Software2024-03-10T12:27:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50672024-03-10T12:27:59Z2024-03-12T10:21:48ZProject RACCOON: Automated construction of PDB files for polymers and polymer peptide conjugatesacceptedv1.0.12024-01-10 16:52:37 UTC952024-03-10 12:27:59 UTC920246293MoritzL.ObenauerDepartment of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany0009-0003-8140-9907KaiN.SpauszusDepartment of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany0009-0006-0650-2273PolBeseniusDepartment of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany0000-0001-7478-4459FriederikeSchmidInstitute of Physics, Johannes Gutenberg University, Staudingerweg 9, 55128 Mainz, Germany0000-0002-5536-671810.21105/joss.06293https://doi.org/10.5281/zenodo.10776652Jupyter Notebook, Python, Bikeshedhttps://joss.theoj.org/papers/10.21105/joss.06293.pdfcheminformatics, molecular-dynamics-simulatiom, pdb-files, molecular-modelingtag:joss.theoj.org,2005:Paper/51202024-02-27T22:28:57Z2024-03-08T22:12:44ZLobsterPy: A package to automatically analyze LOBSTER runsacceptedv0.3.62024-01-19 14:16:48 UTC942024-02-27 22:28:57 UTC920246286AakashAshokNaikFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany, Friedrich Schiller University Jena, Institute of Condensed Matter Theory and Solid-State Optics, Jena, 07743, Germany0000-0002-6071-6786KatharinaUeltzenFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany0009-0003-2967-1182ChristinaErturalFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany0000-0002-7696-5824AdamJ.JacksonScientific Computing Department, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, OX11 0QX, UK0000-0001-5272-6530JanineGeorgeFederal Institute for Materials Research and Testing, Materials Chemistry Department, Berlin, 12205, Germany, Friedrich Schiller University Jena, Institute of Condensed Matter Theory and Solid-State Optics, Jena, 07743, Germany0000-0001-8907-033610.21105/joss.06286https://doi.org/10.5281/zenodo.10713348Pythonhttps://joss.theoj.org/papers/10.21105/joss.06286.pdfAutomation, Bonding analysis, Machine learningtag:joss.theoj.org,2005:Paper/47132024-01-11T17:22:56Z2024-01-12T00:01:07ZLIBSsa: an open source software for analyzing LIBS spectraacceptedv2.1.02023-08-21 20:15:54 UTC932024-01-11 17:22:56 UTC920245961KleydsonStenioDepartment of Biotechnology, Federal University of São Carlos, São Carlos, SP 13563-905, Brazil, Embrapa Instrumentation, São Carlos, SP 13560-970, Brazil0000-0002-1407-9712DéboraMarcondes Bastos PereiraMiloriEmbrapa Instrumentation, São Carlos, SP 13560-970, Brazil0000-0003-1253-717410.21105/joss.05961https://doi.org/10.5281/zenodo.10447382Pythonhttps://joss.theoj.org/papers/10.21105/joss.05961.pdfLIBS, spectroscopy, modeling, automationtag:joss.theoj.org,2005:Paper/45722024-01-07T20:44:54Z2024-01-08T11:58:28ZinAccessMod: An R package to automate data downloading and processing for AccessModacceptedv1.02023-06-30 11:16:48 UTC932024-01-07 20:44:54 UTC920245879PabloTimonerGeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland0000-0003-4757-4928FleurHierinkGeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland0000-0002-2727-0540LoïcBaecherGeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, SwitzerlandCarolineFuhrerHealth Resources and Services Availability Monitoring System (HeRAMS) Initiative, World Health Organization Headquarters. Geneva, Switzerland.NicolasRayGeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland0000-0002-4696-531310.21105/joss.05879https://doi.org/10.5281/zenodo.10466894Rhttps://joss.theoj.org/papers/10.21105/joss.05879.pdfGIS, geographical accessibility, health coveragetag:joss.theoj.org,2005:Paper/46272023-11-11T03:33:46Z2023-11-12T00:00:50ZMAHOS: Measurement Automation Handling and Orchestration Systemacceptedv0.2.22023-07-27 00:47:09 UTC912023-11-11 03:33:46 UTC820235938KosukeTaharaToyota Central R&D Labs., Inc., Japan0000-0002-9474-897010.21105/joss.05938https://doi.org/10.5281/zenodo.10074373Python, C++https://joss.theoj.org/papers/10.21105/joss.05938.pdfinstrumentation, measurement automation, laboratory automation, distributed systems, solid-state color centertag:joss.theoj.org,2005:Paper/42742023-06-01T21:46:48Z2023-06-02T11:36:06Zpypromice: A Python package for processing automated weather station dataacceptedv1.1.02023-03-03 12:17:02 UTC862023-06-01 21:46:48 UTC820235298PenelopeR.HowDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark0000-0002-8088-8497PatrickJ.WrightDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark0000-0003-2999-9076KennethD.MankoffDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark, Autonomic Integra, New York, NY, USA, NASA Goddard Institute for Space Studies, New York, NY, USA0000-0001-5453-2019BaptisteVandecruxDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark0000-0002-4169-8973RobertS.FaustoDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark0000-0003-1317-8185AndreasP.AhlstrømDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, Denmark0000-0001-8235-807010.21105/joss.05298https://doi.org/10.22008/FK2/3TSBF0Pythonhttps://joss.theoj.org/papers/10.21105/joss.05298.pdfglaciology, climate, promice, gc-net, geus, greenland, kalaallit-nunaattag:joss.theoj.org,2005:Paper/42882023-05-19T14:59:08Z2023-05-20T00:01:17ZVaMPy: An Automated and Objective Pipeline for Modeling Vascular Geometriesacceptedv1.0.12023-03-08 11:08:28 UTC852023-05-19 14:59:08 UTC820235278HenrikA.KjeldsbergDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0002-7764-4248AslakW.BergersenDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0001-5063-3680KristianValen-SendstadDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0002-2907-017110.21105/joss.05278https://doi.org/10.5281/zenodo.7950605Pythonhttps://joss.theoj.org/papers/10.21105/joss.05278.pdfpre-processing, computational fluid dynamics, post-processing, vascular modeling, automated objective pipelinetag:joss.theoj.org,2005:Paper/40322023-04-28T18:42:26Z2023-05-03T13:24:13ZPyra: Automated EM27/SUN Greenhouse Gas Measurement Softwareaccepted4.0.62022-11-30 10:03:54 UTC842023-04-28 18:42:26 UTC820235131PatrickAignerEnvironmental Sensing and Modeling, Technical University of Munich (TUM), Munich, Germanyㅤㅤ0000-0002-1530-415XMoritzMakowskiEnvironmental Sensing and Modeling, Technical University of Munich (TUM), Munich, Germanyㅤㅤ0000-0002-2948-2993AndreasLutherEnvironmental Sensing and Modeling, Technical University of Munich (TUM), Munich, Germanyㅤㅤ0000-0001-6382-0899FlorianDietrichEnvironmental Sensing and Modeling, Technical University of Munich (TUM), Munich, Germanyㅤㅤ0000-0002-3069-9946JiaChenEnvironmental Sensing and Modeling, Technical University of Munich (TUM), Munich, Germanyㅤㅤ0000-0002-6350-661010.21105/joss.05131https://doi.org/10.5281/zenodo.7825610Python, JavaScript, TypeScripthttps://joss.theoj.org/papers/10.21105/joss.05131.pdfautomation, remote sensing, spectroscopy, atmospheric science, greenhouse gas, city emissions, carbon dioxide, methane, carbon monoxide, EM27/SUN, bruker, opus, camtracker, python, typescript, html, css, user interface, tauri, ssh, scp, docusaurus, tailwindcsstag:joss.theoj.org,2005:Paper/39292023-03-07T15:19:21Z2023-03-08T00:04:22ZHydroMT: Automated and reproducible model building and analysisacceptedv0.5.02022-09-28 08:56:15 UTC832023-03-07 15:19:21 UTC820234897DirkEilanderDeltares, The Netherlands, Institution for Environmental Studies (IVM), Vrije Universiteit Amsterdam, The Netherlands0000-0002-0951-8418HélèneBoisgontierDeltares, The NetherlandsLaurèneJ. e.BouazizDeltares, The Netherlands0000-0003-0597-8051JoostBuitinkDeltares, The NetherlandsAnaïsCouasnonDeltares, The Netherlands, Institution for Environmental Studies (IVM), Vrije Universiteit Amsterdam, The Netherlands0000-0001-9372-841XBrendanDalmijnDeltares, The NetherlandsMarkHegnauerDeltares, The NetherlandsTjallingde JongDeltares, The NetherlandsSibrenLoosDeltares, The NetherlandsIndraMarthDeltares, The NetherlandsWillemvan VerseveldDeltares, The Netherlands0000-0003-3311-738X10.21105/joss.04897https://doi.org/10.5281/zenodo.7663065Pythonhttps://joss.theoj.org/papers/10.21105/joss.04897.pdfreproducible model building, model analysis, hydrology, hydrodynamics, gistag:joss.theoj.org,2005:Paper/38582023-02-20T17:45:21Z2023-04-18T07:24:31ZMetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysisacceptedv.1.0.02022-09-08 01:21:00 UTC822023-02-20 17:45:21 UTC820234851BabakShabanMelbourne Data Analytics Platform, The University of Melbourne0000-0002-7393-810XMaria del MarQuirogaMelbourne Data Analytics Platform, The University of Melbourne0000-0002-8943-2808RobertTurnbullMelbourne Data Analytics Platform, The University of Melbourne0000-0003-1274-6750EdoardoTescariMelbourne Data Analytics Platform, The University of Melbourne0000-0003-1157-4897Kim-AnhLêCaoSchool of Mathematics and Statistics, Melbourne Integrative Genomics, The University of Melbourne0000-0003-3923-1116HeroenVerbruggenSchool of BioSciences, The University of Melbourne0000-0002-6305-474910.21105/joss.04851https://doi.org/10.26188/22032425wdl, Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04851.pdfmetagenomics, WDL, Singularity, Containerization