tag:joss.theoj.org,2005:/papers/tagged/ABCJournal of Open Source Software2024-03-24T14:42:39ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44352024-03-24T14:42:39Z2024-03-25T00:01:12ZViable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheriesaccepted1.0.02023-04-17 14:17:24 UTC952024-03-24 14:42:39 UTC920245731CarstenLemmenHelmholtz-Zentrum Hereon, Institute of Coastal Systems - Modeling and Analysis, Germany, carsten.lemmen@hereon.de0000-0003-3483-6036SaschaHokampUniversität Hamburg, Centre for Earth System Research and Sustainability (CEN), Germany0000-0002-2192-4013SerraÖreyHochschule Bremerhaven, Research Cluster Life Sciences, Bremerhaven, Germany0000-0003-3483-6036JürgenScheffranUniversität Hamburg, Centre for Earth System Research and Sustainability (CEN), Germany0000-0002-7171-306210.21105/joss.05731https://doi.org/10.5281/zenodo.7928199R, Schemehttps://joss.theoj.org/papers/10.21105/joss.05731.pdfNetLogo, Agent-based Model, ABM, North Sea, Fisheries, MuSSeL project, VIABLE, Plaice, Sole, Shrimptag:joss.theoj.org,2005:Paper/30012024-02-29T18:30:52Z2024-03-01T00:00:33ZcppTPSA/pyTPSA: a C++/Python package for truncated power series algebraacceptedv1.0.02021-08-27 20:06:27 UTC942024-02-29 18:30:52 UTC920244818HeZhangThomas Jefferson National Accelerator Facility, Newport News, VA 23606, USA0000-0001-7701-411810.21105/joss.04818https://doi.org/10.5281/zenodo.10728770C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04818.pdfdifferential algebra, truncated power series algebra, accelerator physics, astronomy, beam dynamicstag:joss.theoj.org,2005:Paper/40952024-01-23T15:58:31Z2024-01-24T00:01:23ZA C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulatorsaccepted1.0.02022-12-20 10:19:22 UTC932024-01-23 15:58:31 UTC920245194MatthiasMayrDepartment of Computer Science, Faculty of Engineering (LTH), Lund University, Sweden, Wallenberg AI, Autonomous Systems and Software Program (WASP), Sweden0000-0002-8198-3154JulianM.Salt-DucajuWallenberg AI, Autonomous Systems and Software Program (WASP), Sweden, Department of Automatic Control, Faculty of Engineering (LTH), Lund University, Sweden0000-0001-5256-824510.21105/joss.05194https://doi.org/10.5281/zenodo.10513691C++, Chttps://joss.theoj.org/papers/10.21105/joss.05194.pdfROS, Compliant Control, Cartesian Impedance Controllertag:joss.theoj.org,2005:Paper/46002023-10-03T20:23:42Z2023-10-04T10:38:48ZepiworldR: Fast Agent-Based Epi Modelsaccepted0.0-22023-07-13 15:39:41 UTC902023-10-03 20:23:42 UTC820235781DerekMeyerDivision of Epidemiology, University of Utah, Salt Lake City, UT, United States of America0009-0005-1350-6988GeorgeG VegaYonDivision of Epidemiology, University of Utah, Salt Lake City, UT, United States of America0000-0002-3171-084410.21105/joss.05781https://doi.org/10.5281/zenodo.8327345R, M4, C++https://joss.theoj.org/papers/10.21105/joss.05781.pdfABM, epiworldR, parallel computingtag:joss.theoj.org,2005:Paper/37022023-03-01T14:33:26Z2023-03-04T00:04:02ZThermoFun: A C++/Python library for computing standard thermodynamic properties of substances and reactions across wide ranges of temperatures and pressuresacceptedv0.3.92022-07-05 16:41:49 UTC832023-03-01 14:33:26 UTC820234624GeorgeDanMironLaboratory for Waste Management LES, Paul Scherrer Institut, 5232 Villigen, Switzerland0000-0002-6923-7300AllanM. m.LealGeothermal Energy and Geofluids Group, Institute of Geophysics, ETH Zurich, SwitzerlandS.v.DmytrievaCosylab Switzerland GmbH, Badenerstrasse 13, CH–5200 Brugg, SwitzerlandDmitriiA.KulikLaboratory for Waste Management LES, Paul Scherrer Institut, 5232 Villigen, Switzerland10.21105/joss.04624https://doi.org/10.5281/zenodo.7614065C++, C, QMakehttps://joss.theoj.org/papers/10.21105/joss.04624.pdfPython, thermodynamics, standard state thermodynamic properties, equations of state, materialstag:joss.theoj.org,2005:Paper/29362023-01-21T00:10:10Z2023-01-22T00:01:01ZPIVC: A C/C++ Program for Particle Image Velocimetry Vector Computationacceptedv1.0.02021-08-10 23:04:30 UTC812023-01-21 00:10:10 UTC820233736KadeemDennisDepartment of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario, Canada, N6A 3K7MichaelMarxenDepartment of Psychiatry and Neuroimaging Center, Technische Universität Dresden, Würzburger Straße 35, 01187 Dresden, Germany0000-0001-8870-0041KamranSiddiquiDepartment of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario, Canada, N6A 3K710.21105/joss.03736https://doi.org/10.5281/zenodo.7556040C++, Chttps://joss.theoj.org/papers/10.21105/joss.03736.pdffluid mechanics, particle image velocimetry, image analysis, C/C++tag:joss.theoj.org,2005:Paper/37642022-11-04T21:27:26Z2022-11-08T13:57:28Zbtllib: A C++ library with Python interface for efficient genomic sequence processingacceptedv1.4.42022-08-04 01:28:45 UTC792022-11-04 21:27:26 UTC720224720VladimirNikolićCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, Canada0000-0002-2992-9935ParhamKazemiCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, CanadaLaurenCoombeCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0002-7518-2326JohnathanWongCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, CanadaAmirhosseinAfshinfardCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, Canada0000-0002-6875-4939JustinChuCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada, Bioinformatics Graduate Program, The University of British Columbia, Vancouver, BC, CanadaRenéL.WarrenCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0002-9890-2293InançBirolCanada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC, Canada0000-0003-0950-783910.21105/joss.04720https://doi.org/10.5281/zenodo.7275416Python, C, Rhttps://joss.theoj.org/papers/10.21105/joss.04720.pdfC++, bioinformatics, algorithms, data structures, genome, bloom filtertag:joss.theoj.org,2005:Paper/34442022-06-25T17:36:18Z2022-06-26T00:01:16ZpyABC: Efficient and robust easy-to-use approximate Bayesian computationaccepted0.12.22022-03-26 22:08:05 UTC742022-06-25 17:36:18 UTC720224304YannikSchälteFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany, Institute of Computational Biology, Helmholtz Center Munich, Neuherberg, Germany, Center for Mathematics, Technical University Munich, Garching, Germany0000-0003-1293-820XEmmanuelKlingerInstitute of Computational Biology, Helmholtz Center Munich, Neuherberg, Germany, Center for Mathematics, Technical University Munich, Garching, Germany, Department of Connectomics, Max Planck Institute for Brain Research, Frankfurt, GermanyEmadAlamoudiFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany0000-0002-9129-4635JanHasenauerFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany, Institute of Computational Biology, Helmholtz Center Munich, Neuherberg, Germany, Center for Mathematics, Technical University Munich, Garching, Germany0000-0002-4935-331210.21105/joss.04304https://doi.org/10.5281/zenodo.6677826Python, Makohttps://joss.theoj.org/papers/10.21105/joss.04304.pdfapproximate Bayesian computation, ABC, likelihood-free inference, high-performance computing, parallel, sequential Monte Carlotag:joss.theoj.org,2005:Paper/33812022-05-25T14:46:47Z2022-05-26T00:01:18Zlintegrate: A C/Python numerical integration library for working in log-spaceacceptedv0.1.112022-02-17 19:47:26 UTC732022-05-25 14:46:47 UTC720224231MatthewPitkinDepartment of Physics, Lancaster University, Lancaster, UK, LA1 4YB0000-0003-4548-526X10.21105/joss.04231https://doi.org/10.5281/zenodo.6419039Python, Chttps://joss.theoj.org/papers/10.21105/joss.04231.pdfnumerical integration, GSLtag:joss.theoj.org,2005:Paper/31882022-03-16T19:25:29Z2022-10-11T12:05:08ZCastor: A C++ library to code "à la Matlab"acceptedv1.0.02021-11-23 10:54:40 UTC712022-03-16 19:25:29 UTC720223965MatthieuAussalEcole Polytechnique (CMAP), INRIA, Institut Polytechnique Paris, Route de Saclay 91128, Palaiseau, France0000-0002-2812-7578MarcBakryEcole Polytechnique (CMAP), INRIA, Institut Polytechnique Paris, Route de Saclay 91128, Palaiseau, FranceLaurentSeriesEcole Polytechnique (CMAP), Institut Polytechnique Paris, Route de Saclay 91128, Palaiseau, France10.21105/joss.03965https://doi.org/10.5281/zenodo.6360120C++https://joss.theoj.org/papers/10.21105/joss.03965.pdfScientific computing, Fast prototyping, FEM/BEM simulation