tag:joss.theoj.org,2005:/papers/reviewed_by/@vals
Journal of Open Source Software
2021-05-04T14:15:21Z
Journal of Open Source Software
https://joss.theoj.org
tag:joss.theoj.org,2005:Paper/1807
2021-05-04T14:15:21Z
2021-05-05T00:02:35Z
starfish: scalable pipelines for image-based transcriptomics
accepted
v0.2.1
2020-06-29 18:47:44 UTC
61
2021-05-04 14:15:21 UTC
6
2021
2440
Shannon
Axelrod
Chan Zuckerberg Initiative
Matthew
Cai
Chan Zuckerberg Initiative
0000-0003-4998-6328
Ambrose
J.
Carr
Chan Zuckerberg Initiative
0000-0002-8457-2836
Jeremy
Freeman
Chan Zuckerberg Initiative
0000-0001-7077-7972
Deep
Ganguli
Chan Zuckerberg Initiative
Justin
T.
Kiggins
Chan Zuckerberg Initiative
0000-0002-4638-7015
Brian
Long
Allen Institute for Brain Science
0000-0002-7793-5969
Tony
Tung
Chan Zuckerberg Initiative
Kevin
A.
Yamauchi
Chan Zuckerberg Biohub
0000-0002-7818-1388
10.21105/joss.02440
https://doi.org/10.5281/zenodo.4734993
Jupyter Notebook, Python, wdl
https://joss.theoj.org/papers/10.21105/joss.02440.pdf
xarray, skimage, microscopy, imaging, biology, single cell biology, spatial transcriptomics, MERFISH, In Situ Sequencing, osmFISH, smFISH, BaristaSeq, dartfish, starmap, seqFISH
tag:joss.theoj.org,2005:Paper/280
2017-10-25T00:00:00Z
2021-02-15T11:33:54Z
ENASearch: A Python library for interacting with ENA's API
accepted
0.1.1
2017-09-12 15:04:35 UTC
18
2017-10-25 00:00:00 UTC
2
2017
418
Bérénice
Batut
Bioinformatics group, Freiburg, Germany
0000-0001-9852-1987
Björn
Grüning
Bioinformatics group, Freiburg, Germany
0000-0002-3079-6586
10.21105/joss.00418
https://doi.org/10.5281/zenodo.1034619
Python
https://joss.theoj.org/papers/10.21105/joss.00418.pdf
European Nucleotide Archive, API, REST, Galaxy