tag:joss.theoj.org,2005:/papers/reviewed_by/@tonigiJournal of Open Source Software2024-01-29T16:38:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42112024-01-29T16:38:15Z2024-01-30T08:20:19ZChitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulationsaccepted1.02023-02-15 16:12:05 UTC932024-01-29 16:38:15 UTC920245771DavidMalaspinaInstitut de Ciencia de Materials de Barcelona (ICMAB-CSIC),Campus UAB Bellaterra, Barcelona, Spain0000-0002-5420-9534JordiFaraudoInstitut de Ciencia de Materials de Barcelona (ICMAB-CSIC),Campus UAB Bellaterra, Barcelona, Spain0000-0002-6315-499310.21105/joss.05771https://doi.org/10.5281/zenodo.3274725Tcl, Rich Text Formathttps://joss.theoj.org/papers/10.21105/joss.05771.pdfVMD, chitin polymer structure, molecular dynamics, tcltag:joss.theoj.org,2005:Paper/41952023-07-06T15:27:41Z2023-07-07T00:01:21ZMembraneAnalysis.jl: A Julia package for analyzing molecular dynamics simulations of lipid membranesacceptedv0.1.02023-02-07 20:46:18 UTC872023-07-06 15:27:41 UTC820235380AmiraliHosseinEunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, United States of America0000-0002-2580-3577AlexanderJ.SodtEunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD, United States of America0000-0002-5570-821210.21105/joss.05380https://doi.org/10.5281/zenodo.8084178Juliahttps://joss.theoj.org/papers/10.21105/joss.05380.pdfbiophysics, molecular dynamics, lipid membranestag:joss.theoj.org,2005:Paper/31972022-01-06T17:19:17Z2022-01-07T00:02:00Zphysical_validation: A Python package to assess the physical validity of molecular simulation resultsacceptedv1.02021-11-30 09:51:45 UTC692022-01-06 17:19:17 UTC720223981PascalT.MerzDepartment of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80309, United States of America0000-0002-7045-8725Wei-TseHsuDepartment of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80309, United States of AmericaMattW.ThompsonDepartment of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80309, United States of AmericaSimonBoothroydBoothroyd Scientific Consulting Ltd., 71-75 Shelton Street, London, United KingdomChrisC.WalkerDepartment of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80309, United States of AmericaMichaelR.ShirtsDepartment of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80309, United States of America0000-0003-3249-109710.21105/joss.03981https://doi.org/10.5281/zenodo.5815657Pythonhttps://joss.theoj.org/papers/10.21105/joss.03981.pdfmolecular simulation, molecular dynamics, molecular mechanics, statistical mechanics, physical validation