tag:joss.theoj.org,2005:/papers/reviewed_by/@shahmoradiJournal of Open Source Software2024-02-07T22:25:26ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/46792024-02-07T22:25:26Z2024-02-12T11:55:04ZChi: A Python package for treatment response modellingacceptedv0.2.32023-08-06 13:35:22 UTC942024-02-07 22:25:26 UTC920245925DavidAugustinDepartment of Computer Science, University of Oxford, Oxford, United Kingdom0000-0002-4885-108810.21105/joss.05925https://doi.org/10.5281/zenodo.10510572Pythonhttps://joss.theoj.org/papers/10.21105/joss.05925.pdfpkpd, treatment planning, inference, Bayesian inferencetag:joss.theoj.org,2005:Paper/45742023-12-18T18:08:54Z2023-12-19T00:00:30Zparafields: A generator for distributed, stationary Gaussian processesacceptedv0.3.02023-07-03 12:18:52 UTC922023-12-18 18:08:54 UTC820235735DominicKempfScientific Software Center, Heidelberg University, Heidelberg, Germany, Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany0000-0002-6140-2332OleKleinIndependent Researcher, Heidelberg, Germany0000-0002-3295-7347RobertKutriInterdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany, Institute for Mathematics, Heidelberg University, Heidelberg, Germany0009-0004-8123-4673RobertScheichlInterdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany, Institute for Mathematics, Heidelberg University, Heidelberg, Germany0000-0001-8493-4393PeterBastianInterdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany10.21105/joss.05735https://doi.org/10.5281/zenodo.10355636Python, C++, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05735.pdfMPI, scientific computing, high performance computing, uncertainty quantification, random field generation, circulant embeddingtag:joss.theoj.org,2005:Paper/33022023-10-27T15:31:05Z2023-10-28T00:00:41ZUncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelinesacceptedv0.2.0b2022-01-21 23:18:23 UTC902023-10-27 15:31:05 UTC820234249JessTateScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA0000-0002-2934-1453ZexinLiuScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Mathematics Department, University of Utah, Salt Lake City, UT, USA0000-0003-3409-5709JakeA.BergquistScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Biomedical Engineering Department , University of Utah, Salt Lake City, UT, USA, Nora Eccles Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, UT, USA0000-0002-4586-6911SumientraRampersadPhysics Department, University of Massachusetts, Boston, MA, USA, Electrical and Computer Engineering Department, Northeastern University, Boston, MA, USA0000-0001-9860-4459DanWhiteScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USAChantelCharleboisScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Biomedical Engineering Department , University of Utah, Salt Lake City, UT, USA0000-0002-4139-3539LindsayRuppScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Biomedical Engineering Department , University of Utah, Salt Lake City, UT, USA, Nora Eccles Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, UT, USA0000-0002-2688-7688DanaH.BrooksElectrical and Computer Engineering Department, Northeastern University, Boston, MA, USA0000-0003-3231-6715RobS.MacLeodScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Biomedical Engineering Department , University of Utah, Salt Lake City, UT, USA, Nora Eccles Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, UT, USA0000-0002-0000-0356AkilNarayanScientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, USA, Mathematics Department, University of Utah, Salt Lake City, UT, USA0000-0002-5914-420710.21105/joss.04249https://doi.org/10.5281/zenodo.8226383Pythonhttps://joss.theoj.org/papers/10.21105/joss.04249.pdfuncertainty quantification, computer modeling, polynomial chaos, bioelectricitytag:joss.theoj.org,2005:Paper/45082023-09-02T03:36:57Z2023-09-03T00:01:27ZGaussianRandomFields.jl: A Julia package to generate and sample from Gaussian random fieldsacceptedv2.2.22023-05-27 17:06:59 UTC892023-09-02 03:36:57 UTC820235595PieterjanRobbeKU Leuven, Belgium0000-0002-6254-824510.21105/joss.05595https://doi.org/10.5281/zenodo.8306255Juliahttps://joss.theoj.org/papers/10.21105/joss.05595.pdfrandom fields, uncertainty quantification, statisticstag:joss.theoj.org,2005:Paper/41872023-05-30T10:10:11Z2023-05-31T00:01:19ZproteoDA: a package for quantitative proteomicsacceptedv1.0.02023-02-02 15:47:05 UTC852023-05-30 10:10:11 UTC820235184TimothyJ.ThurmanDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-9602-6226CharityL.WashamDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-5761-9304DuahAlkamDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-5965-7694JordanT.BirdDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-5753-6058AllenGiesDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0003-2492-0429KalyaniDhusiaDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-8803-1295MichaelS.RobesonDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-7119-6301StephanieD.ByrumDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA, Arkansas Children's Research Institute, Little Rock, AR, USA0000-0002-1783-361010.21105/joss.05184https://doi.org/10.5281/zenodo.7962306R, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05184.pdfmass spectrometry, intensity data, normalization, linear modelstag:joss.theoj.org,2005:Paper/28202022-02-11T21:08:08Z2022-02-12T00:00:58ZSIMsalabim: An open-source drift-diffusion simulator for semiconductor devicesacceptedv4.052021-06-24 13:59:22 UTC702022-02-11 21:08:08 UTC720223727MartenKoopmansZernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The NetherlandsVincentM. LeCorreZernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The NetherlandsL.Jan AntonKosterZernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands10.21105/joss.03727https://doi.org/10.5281/zenodo.6010442Pascal, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03727.pdfsemiconductor, solar cell, drift-diffusion, diode