tag:joss.theoj.org,2005:/papers/reviewed_by/@jkancheJournal of Open Source Software2022-06-09T23:19:11ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/33862022-06-09T23:19:11Z2022-06-10T01:21:12ZVIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysisacceptedv0.1.12022-02-21 19:51:00 UTC742022-06-09 23:19:11 UTC720224242CristianeHayumiTanigutiDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA0000-0002-2021-6883GabrielSiqueirade GesteiraBioinformatics Research Center, Department of Horticultural Sciences, North Carolina State University, Raleigh, NC, USA0000-0002-4106-7346JeekinLauDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA0000-0003-1114-6892GuilhermeSilvada PereiraDepartment of Agronomy, Federal University of Viçosa, Brazil0000-0002-7106-8630Zhao-BangZengBioinformatics Research Center, Department of Horticultural Sciences, North Carolina State University, Raleigh, NC, USA0000-0002-3115-1149DavidByrneDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA0000-0001-5460-2419OscarRiera-LizarazuDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA0000-0002-7477-4063MarceloMollinariBioinformatics Research Center, Department of Horticultural Sciences, North Carolina State University, Raleigh, NC, USA0000-0002-7001-849810.21105/joss.04242https://doi.org/10.5281/zenodo.6621089Rhttps://joss.theoj.org/papers/10.21105/joss.04242.pdfShiny, Linkage map, QTL, Polyploidtag:joss.theoj.org,2005:Paper/26212021-07-01T04:49:26Z2021-07-02T00:01:30ZDataLad: distributed system for joint management of code, data, and their relationshipaccepted0.14.32021-05-03 19:52:41 UTC632021-07-01 04:49:26 UTC620213262YaroslavO.HalchenkoCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0003-3456-2493KyleMeyerCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USABenjaminPoldrackInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0001-7628-0801DebanjumSinghSolankyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0002-0774-6564AdinaS.WagnerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2917-3450JasonGorsCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USADaveMacFarlaneMcGill Center for Integrative Neuroscience, Montreal, CanadaDorianPustinaCHDI Management/CHDI Foundation, Princeton, NJ, USA0000-0002-2834-7220VanessaSochatLawrence Livermore National Lab, Livermore, CA, USA0000-0002-4387-3819SatrajitS.GhoshMassachusetts Institute of Technology, Cambridge, MA, USA0000-0002-5312-6729ChristianMönchInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-3092-0612ChristopherJ.MarkiewiczStanford University, Stanford, CA, USA0000-0002-6533-164XLauraWaiteInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2213-7465IlyaShlyakhterQuest Diagnostics, Marlborough, MA, USA0000-0002-9854-5118Alejandrode la VegaThe University of Austin at Austin, Austin, TX, USA0000-0001-9062-3778SoichiHayashiIndiana University, Bloomington, IN, USA0000-0003-3641-3491ChristianOlafHäuslerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0002-0936-317XJean-BaptistePolineFaculty of Medicine and Health Sciences, McConnell Brain Imaging Center, McGill University, Montreal, Canada0000-0002-9794-749XTobiasKadelkaInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-0152-3490KustiSkyténUniversity of Oslo, Oslo, Norway0000-0001-7460-1157DorotaJareckaMassachusetts Institute of Technology, Cambridge, MA, USA0000-0001-8282-2988DavidKennedyUniversity of Massachusetts Medical School, Worcester, MA, USA0000-0002-9377-0797TedStraussMontreal Neurological Institute, McGill University, Montreal, Canada0000-0002-1927-666XMattCieslakUniversity of Pennsylvania, Philadelphia, PA0000-0002-1931-4734PeterVavraDepartment of Biological Psychology, Otto-von-Guericke-University Magdeburg, Magdeburg, Germany0000-0001-8432-5459Horea-IoanIoanasDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, USA0000-0001-7037-2449RobinSchneiderIndependent Developer, Germany0000-0003-1952-5459MikaPflügerPotsdam Institute for Climate Impact Research (PIK) e. V., Potsdam, Germany0000-0002-7814-8916JamesV.HaxbyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USASimonB.EickhoffInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6363-2759MichaelHankeInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6398-637010.21105/joss.03262https://doi.org/10.5281/zenodo.5034875https://joss.theoj.org/papers/10.21105/joss.03262.pdfPython, command line, version control, data management, data distribution, data provenance, reproducibilitytag:joss.theoj.org,2005:Paper/17462020-10-18T19:14:40Z2021-02-15T11:30:28ZViime: Visualization and Integration of Metabolomics Experimentsacceptedv0.1.02020-06-16 17:17:14 UTC542020-10-18 19:14:40 UTC520202410RoniChoudhuryKitware Inc.JonBeezleyKitware Inc.BrandonDavisKitware Inc.JaredTomeckKitware Inc.SamuelGratzlKitware Inc.LilianGolzarri-ArroyoDepartment of Epidemiology and Biostatistics, Indiana University School of Public HealthJunWanDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Department of BioHealth Informatics, Indiana University School of Informatics and ComputingDanielRafteryDepartment of Anesthesiology and Pain Medicine, University of WashingtonJeffBaumesKitware Inc.ThomasM.O'ConnellDepartment of Otolaryngology--Head and Neck Surgery, Indiana University School of Medicine10.21105/joss.02410https://doi.org/10.5281/zenodo.4086165R, JavaScript, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02410.pdfmetabolomics, visualization, web applicationtag:joss.theoj.org,2005:Paper/11642019-10-10T14:52:47Z2021-02-15T11:31:46Zmolic: An R package for multivariate outlier detection in contingency tablesacceptedv0.5.02019-08-16 06:45:54 UTC422019-10-10 14:52:47 UTC420191665MadsLindskouDepartment of Mathematical Sciences, Aalborg University, Denmark, Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark0000-0002-1033-697X10.21105/joss.01665https://doi.org/10.5281/zenodo.3475854R, C++https://joss.theoj.org/papers/10.21105/joss.01665.pdfRcpp, outlier detection, contingency tables, graphical models, decomposable graphstag:joss.theoj.org,2005:Paper/9592019-07-10T12:54:57Z2021-02-15T11:32:18ZLexicon-Mono-Seq, DOM Text Based Async MSA Vieweracceptedv0.15.122019-04-12 13:20:54 UTC392019-07-10 12:54:57 UTC420191407IbrahimTanyalcinVrije Universiteit Brussel0000-0003-0327-509610.21105/joss.01407https://doi.org/10.5281/zenodo.3273310JavaScripthttps://joss.theoj.org/papers/10.21105/joss.01407.pdfES5, async, requestAnimationFrame, js, BioJs, Bionode, alignment, sequence, bioinformatics, msa