tag:joss.theoj.org,2005:/papers/reviewed_by/@grlee77Journal of Open Source Software2020-12-12T08:36:45ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/20552020-12-12T08:36:45Z2021-02-15T11:29:54ZPyQMRI: An accelerated Python based Quantitative MRI toolboxacceptedv0.3.12020-10-02 11:10:02 UTC562020-12-12 08:36:45 UTC520202727OliverMaierInstitute of Medical Engineering, Graz University of Technology, Graz, Austria0000-0002-7800-0022StefanM.SpannInstitute of Medical Engineering, Graz University of Technology, Graz, AustriaMarkusBödenlerInstitute of Medical Engineering, Graz University of Technology, Graz, Austria, Institute of eHealth, University of Applied Sciences FH JOANNEUM, Graz, Austria0000-0001-6018-7821RudolfStollbergerInstitute of Medical Engineering, Graz University of Technology, Graz, Austria, BioTechMed Graz, Austria0000-0002-4969-387810.21105/joss.02727https://doi.org/10.5281/zenodo.4313301Python, Chttps://joss.theoj.org/papers/10.21105/joss.02727.pdfMRI, PyOpenCL, quantitative imaging, parameter mappingtag:joss.theoj.org,2005:Paper/15932020-09-03T13:08:34Z2021-02-15T11:30:51ZqMRLab: Quantitative MRI analysis, under one umbrellaacceptedv2.4.02020-05-20 12:13:09 UTC532020-09-03 13:08:34 UTC520202343AgahKarakuzuNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada, Montreal Heart Institute, University of Montréal, Montréal, Canada0000-0001-7283-271XMathieuBoudreauNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada, Montreal Heart Institute, University of Montréal, Montréal, Canada0000-0002-7726-4456TanguyDuvalNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada0000-0002-1228-5192TommyBoshkovskiNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada0000-0002-5243-5204IlanaR.LeppertMcConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, CanadaJean-FrançoisCabanaChaudière-Appalaches Integrated Health and Social Services Center, Sainte-Marie, Canada0000-0003-0579-5378IanGagnonNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada0000-0001-6815-504XPascaleBeliveauDepartment of radio-oncology, Research Center of the University of Montreal Hospital Center, Montreal, Canada0000-0002-1971-4877G.BrucePikeMcConnell Brain Imaging Center, Montreal Neurological Institute, McGill University, Montreal, Canada, Departments of Radiology and Clinical Neuroscience, Hotchkiss Brain Institute, University of Calgary, Calgary, Canada0000-0001-8924-683XJulienCohen-AdadNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada, Functional Neuroimaging Unit, CRIUGM, University of Montreal, Montreal, Canada0000-0003-3662-9532NikolaStikovNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Canada, Montreal Heart Institute, University of Montréal, Montréal, Canada0000-0002-8480-523010.21105/joss.02343https://doi.org/10.5281/zenodo.4012104Matlab, Objective-Chttps://joss.theoj.org/papers/10.21105/joss.02343.pdfOctave, quantitative magnetic resonance imaging, mri, neuroimagingtag:joss.theoj.org,2005:Paper/18502020-08-26T12:31:23Z2021-02-15T11:30:17ZDisimpy: A massively parallel Monte Carlo simulator for generating diffusion-weighted MRI data in Pythonacceptedv0.12020-07-11 11:57:40 UTC522020-08-26 12:31:23 UTC520202527LeeviKerkeläUCL Great Ormond Street Institute of Child Health, University College London, London, United Kingdom0000-0001-9446-4305FabioNeryUCL Great Ormond Street Institute of Child Health, University College London, London, United KingdomMattG.HallNational Physical Laboratory, Teddington, United Kingdom, UCL Great Ormond Street Institute of Child Health, University College London, London, United KingdomChrisA.ClarkUCL Great Ormond Street Institute of Child Health, University College London, London, United Kingdom10.21105/joss.02527https://doi.org/10.5281/zenodo.4001687Pythonhttps://joss.theoj.org/papers/10.21105/joss.02527.pdfdiffusion MRI, neuroscience, microstructuretag:joss.theoj.org,2005:Paper/11792019-10-12T02:00:37Z2021-02-15T11:31:43ZPyPulseq: A Python Package for MRI Pulse Sequence Designaccepted1.2.22019-08-21 20:53:01 UTC422019-10-12 02:00:37 UTC420191725KeerthiSravanRaviColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0001-6886-0101SairamGeethanathColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0002-3776-4114JohnThomasVaughanColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0002-6933-375710.21105/joss.01725https://doi.org/10.5281/zenodo.3479527Pythonhttps://joss.theoj.org/papers/10.21105/joss.01725.pdfMRI, pulse sequence design, vendor neutraltag:joss.theoj.org,2005:Paper/9062019-08-12T18:08:03Z2021-02-15T11:32:28ZPyBIDS: Python tools for BIDS datasetsaccepted0.8.02019-02-28 17:47:22 UTC402019-08-12 18:08:03 UTC420191294TalYarkoniUniversity of Texas at Austin0000-0002-6558-5113ChristopherJ.MarkiewiczStanford University0000-0002-6533-164XAlejandrode la VegaUniversity of Texas at Austin0000-0001-9062-3778KrzysztofJ.GorgolewskiStanford University0000-0003-3321-7583TaylorSaloFlorida International University0000-0001-9813-3167YaroslavO.HalchenkoDartmouth College0000-0003-3456-2493QuintenMcNamaraUniversity of Texas at AustinKristaDeStasioUniversity of Oregon0000-0002-3959-9060Jean-BaptistePolineMcGill University0000-0002-9794-749XDmitryPetrovUniversity of Southern CaliforniaValérieHayot-SassonConcordia University0000-0002-4830-4535DylanM.NielsonNational Institute of Mental Health0000-0003-4613-6643JohanCarlinMRC Cognition and Brain Sciences Unit0000-0003-0933-1239GregoryKiarMontreal Neurological Institute and Hospital0000-0001-8915-496XKirstieWhitakerAlan Turing Institute0000-0001-8498-4059ElizabethDuPreMontreal Neurological Institute and Hospital0000-0003-1358-196XAdinaWagnerOtto-von-Guericke University Magdeburg0000-0003-2917-3450LeeS.TirrellCorticoMetrics LLC0000-0001-9393-8361MainakJasTélécom ParisTech, France0000-0002-3199-9027MichaelHankeOtto-von-Guericke University Magdeburg0000-0001-6398-6370RussellA.PoldrackStanford University0000-0001-6755-0259OscarEstebanStanford University0000-0001-8435-6191StefanAppelhoffMax Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877ChrisHoldgrafUniversity of California at Berkeley0000-0002-2391-0678IslaStadenQueen Mary University London0000-0002-0795-1154BertrandThirionINRIA0000-0001-5018-7895DaveF.KleinschmidtRutgers University0000-0002-7442-2762JohnA.LeeNational Institute of Mental Health0000-0001-5884-4247MatteoVisconti Oleggiodi CastelloUniversity of California at Berkeley0000-0001-7931-5272MichaelP.NotterUniversity of Lausanne0000-0002-5866-047XRossBlairStanford University0000-0003-3007-105610.21105/joss.01294https://doi.org/10.5281/zenodo.3333492Pythonhttps://joss.theoj.org/papers/10.21105/joss.01294.pdfBIDS, neuroimagingtag:joss.theoj.org,2005:Paper/8012019-06-11T12:04:12Z2021-02-15T11:32:41ZQMRTools: a Mathematica toolbox for quantitative MRI analysis.acceptedv2.02019-01-04 10:54:19 UTC382019-06-11 12:04:12 UTC420191204MartijnFroelingDepartment of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands0000-0003-3841-049710.21105/joss.01204https://doi.org/10.5281/zenodo.3239261Mathematicahttps://joss.theoj.org/papers/10.21105/joss.01204.pdfDiffusion Tensor Imaging, Dixon Imaging, Extended phase graph, Data processing, Simulation