tag:joss.theoj.org,2005:/papers/reviewed_by/@brainstormJournal of Open Source Software2019-04-15T18:02:41ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/8032019-04-15T18:02:41Z2021-02-15T11:32:41ZInstrbuilder: A Python package for electrical instrument controlaccepted0.1.02019-01-06 04:25:30 UTC362019-04-15 18:02:41 UTC420191172LucasJ.KoernerLucas J. Koerner, Department of Electrical and Computer Engineering, University of St. Thomas0000-0002-7236-720210.21105/joss.01172https://doi.org/10.5281/zenodo.2640871Pythonhttps://joss.theoj.org/papers/10.21105/joss.01172.pdfinstrument control, data acquisition, SCPI, electrical engineering, physics, experimentstag:joss.theoj.org,2005:Paper/7082019-03-20T17:32:58Z2021-02-15T11:32:51ZmorphMan: Automated manipulation of vascular geometriesacceptedv0.12018-10-25 14:50:54 UTC352019-03-20 17:32:58 UTC420191065HenrikA.KjeldsbergDepartment of Computational Physiology, Simula Research LaboratoryAslakW.BergersenDepartment of Computational Physiology, Simula Research Laboratory0000-0001-5063-3680KristianValen-SendstadDepartment of Computational Physiology, Simula Research Laboratory0000-0002-2907-017110.21105/joss.01065https://doi.org/10.5281/zenodo.2591725PowerShell, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01065.pdfgeometric-algorithms, morphology, vascular, biomedicaltag:joss.theoj.org,2005:Paper/5822018-08-07T15:25:03Z2021-02-15T11:33:07ZContainershare: Open Source Registry to build, test, deploy with CircleCIacceptedv.0.0.12018-08-04 16:06:18 UTC282018-08-07 15:25:03 UTC32018878VanessaSochatStanford University Research Computing0000-0002-4387-381910.21105/joss.00878https://doi.org/10.5281/zenodo.1341099Pythonhttps://joss.theoj.org/papers/10.21105/joss.00878.pdfcontainers, continuous integration, circleci, docker, api, reproducibilitytag:joss.theoj.org,2005:Paper/4962018-05-26T16:10:20Z2021-02-15T11:33:22ZThe Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Imagesacceptedv1.4.02018-05-15 01:35:40 UTC252018-05-26 16:10:20 UTC32018745RichardIzzoUniversity at Buffalo0000-0002-0811-6513DavidSteinmanUniversity of Toronto0000-0002-7963-1168SimoneManiniOrobix Srl.0000-0003-4350-659XLucaAntigaOrobix Srl.0000-0002-8367-227X10.21105/joss.00745https://doi.org/10.5281/zenodo.1253598Python, PowerShellhttps://joss.theoj.org/papers/10.21105/joss.00745.pdfC++, vascular modeling, image processing, medical imaging, image segmentation, computational geometry, surface extraction, CFD Meshing, hemodynamics, mesh generation, centerlinetag:joss.theoj.org,2005:Paper/3602018-02-05T20:44:45Z2021-02-15T11:33:41ZCheckQC: Quick quality control of Illumina sequencing runsacceptedv1.2.02018-01-26 12:20:37 UTC222018-02-05 20:44:45 UTC32018556MatildaÅslinDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory Uppsala University, Uppsala, Sweden0000-0002-2450-6415MonikaBrandtDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory Uppsala University, Uppsala, Sweden0000-0002-8184-9465JohanDahlbergDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory Uppsala University, Uppsala, Sweden0000-0001-6962-146010.21105/joss.00556https://doi.org/10.5281/zenodo.1166052Pythonhttps://joss.theoj.org/papers/10.21105/joss.00556.pdfillumina, ngs, quality control, mps, sequencingtag:joss.theoj.org,2005:Paper/1982017-05-26T00:00:00Z2021-02-15T11:34:07ZMosquitto: server and client implementation of the MQTT protocolacceptedv1.4.112017-05-17 13:56:59 UTC132017-05-26 00:00:00 UTC22017265RogerA.LightHello0000-0001-9218-779710.21105/joss.00265https://doi.org/10.5281/zenodo.582351Ruby, Pythonhttps://joss.theoj.org/papers/10.21105/joss.00265.pdfInternet of Things, MQTT, Pubsub, Messagingtag:joss.theoj.org,2005:Paper/1722017-05-03T00:00:00Z2021-02-15T11:34:12ZSaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs.acceptedv0.1.22017-03-16 14:19:36 UTC132017-05-03 00:00:00 UTC22017243AndrewJ.PagePathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6919-6062MartinHuntPathogen Informatics, Wellcome Trust Sanger Institute0000-0002-8060-4335TorstenSeemannPathogen Informatics, Wellcome Trust Sanger Institute0000-0001-6046-610XJacquelineA.KeanePathogen Informatics, Wellcome Trust Sanger Institute0000-0002-2021-186310.21105/joss.00243https://doi.org/10.6084/m9.figshare.4964378.v1Pythonhttps://joss.theoj.org/papers/10.21105/joss.00243.pdfbioinformatics, phylogenetics, bacteriatag:joss.theoj.org,2005:Paper/1642017-03-18T00:00:00Z2021-02-15T11:34:13ZVCC: A framework for building containerized reproducible cluster software environmentsacceptedv1.02017-03-06 15:48:51 UTC112017-03-18 00:00:00 UTC22017208JoshuaHigginsHigh Performance Computing Research Group, University of Huddersfield0000-0003-1551-5552VioletaHolmesHigh Performance Computing Research Group, University of Huddersfield0000-0002-9786-4555ColinVentersHigh Performance Computing Research Group, University of Huddersfield10.21105/joss.00208https://doi.org/10.6084/m9.figshare.4763857JavaScripthttps://joss.theoj.org/papers/10.21105/joss.00208.pdfcontainers, HPC, reproducibility, virtualisation, cluster