tag:joss.theoj.org,2005:/papers/reviewed_by/@betteridiotJournal of Open Source Software2024-01-22T15:00:12ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48382024-01-22T15:00:12Z2024-01-23T11:55:19Zcstag and cstag-cli: tools for manipulating and visualizing cs tagsacceptedv1.0.42023-10-06 03:25:34 UTC932024-01-22 15:00:12 UTC920246066AkihiroKunoDepartment of Anatomy and Embryology, University of Tsukuba, Tsukuba, Ibaraki, Japan, Laboratory Animal Resource Center, Trans-border Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.0000-0002-4674-688210.21105/joss.06066https://doi.org/10.5281/zenodo.10544838Pythonhttps://joss.theoj.org/papers/10.21105/joss.06066.pdfpython, genomics, sequencing, bioinformaticstag:joss.theoj.org,2005:Paper/18022020-10-01T19:54:19Z2021-02-15T11:30:25Zcerebra: A tool for fast and accurate summarizing of variant calling format (VCF) filesacceptedv1.1.02020-06-25 17:55:14 UTC542020-10-01 19:54:19 UTC520202432LincolnHarrisChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-2544-4225RohanVanheusdenChan Zuckerberg Biohub, San Francisco, CA, United StatesOlgaBotvinnikChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-4412-7970SpyrosDarmanisChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-4002-815810.21105/joss.02432https://doi.org/10.5281/zenodo.4050557Pythonhttps://joss.theoj.org/papers/10.21105/joss.02432.pdfpython, genomics, variant calling, VCF, single-cell, cancertag:joss.theoj.org,2005:Paper/14182020-05-12T11:01:32Z2021-02-15T11:31:12ZRecan: Python tool for analysis of recombination events in viral genomesacceptedv0.12019-12-20 09:02:51 UTC492020-05-12 11:01:32 UTC520202014YuriyBabinNational Medical Research Center for Tuberculosis and Infectious Diseases, Moscow, Russia0000-0002-7524-592110.21105/joss.02014https://doi.org/10.5281/zenodo.3820660Pythonhttps://joss.theoj.org/papers/10.21105/joss.02014.pdfvirology, recombinationtag:joss.theoj.org,2005:Paper/9092019-04-04T03:07:41Z2021-02-15T11:32:28ZBadread: simulation of error-prone long readsacceptedv0.1.32019-03-01 11:22:17 UTC362019-04-04 03:07:41 UTC420191316RyanR.WickDepartment of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia0000-0001-8349-077810.21105/joss.01316https://doi.org/10.5281/zenodo.2622997Pythonhttps://joss.theoj.org/papers/10.21105/joss.01316.pdflong-read sequencing, oxford nanopore, ont, pacific biosciences, pacbiotag:joss.theoj.org,2005:Paper/7232018-12-17T00:00:00Z2021-02-15T11:32:48ZHickle: A HDF5-based python pickle replacementacceptedv3.2.22018-11-13 05:09:27 UTC322018-12-17 00:00:00 UTC320181115DannyC.PriceDepartment of Astronomy, University of California Berkeley, Berkeley CA 94720, Centre for Astrophysics & Supercomputing, Swinburne University of Technology, Hawthorn, VIC 3122, Australia0000-0003-2783-1608Ellertvan der VeldenCentre for Astrophysics & Supercomputing, Swinburne University of Technology, Hawthorn, VIC 3122, Australia0000-0002-1559-9832SébastienCellesThermal Science and Energy Department, Institut Universitaire de Technologie de Poitiers - Université de Poitiers, France0000-0001-9987-4338PieterT.EendebakQuTech, Delft University of Technology, P.O. Box 5046, 2600 GA Delft, The Netherlands, Netherlands Organisation for Applied Scientific Research (TNO), P.O. Box 155, 2600 AD Delft, The Netherlands0000-0001-7018-1124MichaelM.McKernsInstitute for Advanced Computational Science, Stony Brook University, Stony Brook, NY 11794-52500000-0001-8342-3778EbenM.OlsonDepartment of Laboratory Medicine, Yale University, New Haven CT 06510 USAColinRaffelGoogle Brain, Mountain View, CA, 94043BairenYiThe Hong Kong University of Science and TechnologyElliottAshETH Zurich10.21105/joss.01115https://doi.org/10.5281/zenodo.2345649Pythonhttps://joss.theoj.org/papers/10.21105/joss.01115.pdfastronomy