tag:joss.theoj.org,2005:/papers/reviewed_by/@SirSharpestJournal of Open Source Software2021-05-27T16:05:54ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/25642021-05-27T16:05:54Z2021-05-28T00:01:20Zyaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBMLacceptedv0.2.22021-04-09 14:32:35 UTC612021-05-27 16:05:54 UTC620213215JakobVanhoeferFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany0000-0002-3451-1701MartaR. a.MatosThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark0000-0003-4288-1005DilanPathiranaFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany0000-0001-7000-2659YannikSchälteInstitute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany, Department of Mathematics, Technical University Munich, Garching, Germany0000-0003-1293-820XJanHasenauerFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany, Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany, Department of Mathematics, Technical University Munich, Garching, Germany0000-0002-4935-331210.21105/joss.03215https://doi.org/10.5281/zenodo.4787416Pythonhttps://joss.theoj.org/papers/10.21105/joss.03215.pdfSBML, Ordinary Differential Equation, YAMLtag:joss.theoj.org,2005:Paper/16142020-07-09T17:26:07Z2021-02-15T11:30:47ZBluVision Macro - a software for automated powdery mildew and rust disease quantification on detached leaves.accepted0.4.62020-05-20 15:59:09 UTC512020-07-09 17:26:07 UTC520202259StefanieLueckLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0003-0536-835XUlrikeBeukertJulius Kühn-Institut Quedlinburg, Sachsen-Anhalt0000-0002-9482-3512DimitarDouchkovLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung Gatersleben, Stadt Seeland, Sachsen-Anhalt0000-0001-6603-493010.21105/joss.02259https://doi.org/10.5281/zenodo.3929095Pythonhttps://joss.theoj.org/papers/10.21105/joss.02259.pdfplant phenotyping, powdery mildew, barley, wheat, rust, pucchinia, python, pathogentag:joss.theoj.org,2005:Paper/14342020-02-09T17:12:24Z2021-02-15T11:31:09ZExTemp: A computational and image-processing suite for extracting temporal barcodesaccepted1.02020-01-09 21:44:26 UTC462020-02-09 17:12:24 UTC520202026ShalinShahDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA0000-0002-1406-3577AbhishekDubeyDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA, Computational Sciences and Engineering Division, Health Data Sciences Institute, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, United States0000-0001-8052-7416JohnReifDepartment of Electrical & Computer Engineering, Duke University, Durham, NC 27708, USA, Department of Computer Science, Duke University, Durham, NC 27708, USA10.21105/joss.02026https://doi.org/10.5281/zenodo.3660411Matlabhttps://joss.theoj.org/papers/10.21105/joss.02026.pdfobject detection, signal processing, drift correction, object tracking, microscopy image analysis, computer vision, TIRF, MATLABtag:joss.theoj.org,2005:Paper/11532019-09-20T14:28:10Z2021-02-15T11:31:48ZpySRURGS - a python package for symbolic regression by uniform random global searchaccepted0.12019-08-11 04:01:31 UTC412019-09-20 14:28:10 UTC420191675SohrabTowfighiUniversity of Toronto, Faculty of Medicine0000-0002-3050-894310.21105/joss.01675https://doi.org/10.5281/zenodo.3442594Pythonhttps://joss.theoj.org/papers/10.21105/joss.01675.pdfsymbolic regression, regression analysis, random search, genetic programmingtag:joss.theoj.org,2005:Paper/11472019-09-20T00:00:00Z2021-02-15T11:31:49ZSBMLtoODEpy: A software program for converting SBML models into ODE models in Pythonacceptedv.1.0.22019-08-02 14:48:58 UTC532019-09-20 00:00:00 UTC520201643SteveM.RuggieroSchool of Chemical Engineering, Oklahoma State UniversityAshleeN. FordVersyptSchool of Chemical Engineering, Oklahoma State University0000-0001-9059-570310.21105/joss.01643https://doi.org/10.5281/zenodo.3441677Jupyter Notebook, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.01643.pdfPython, Systems Biology, Modeling