The AnyPyTools package provides a Python interface to automate multibody musculoskeletal model simulations in the AnyBody Modeling System. AnyPyTools enables reproducible research for the AnyBody...

genieR is an R package (R Core Team (2016)) for the inference of demographic history from reconstructed molecular phylogenies,modeled after the C++ package GENIE (Pybus and Rambaut 2002).

tissueloc is a python package for tissue localization in whole slide pathology image.

STEDY is a software package based on MATLAB to enable researchers to simulate dynamics of tensegrity structures.

Cadabra2 is a computer algebra system with functionality designed specifically for the solution of problems in (quantum) field theory.

This package implements the 1D blood flow equations using the finite element framework FEniCS. The package provides tools for modelling blood flow through a network of arteries by solving a 1D...

`hickle`

loads/dumps Python data structures from/into Hierarchical Data Format (HDF5) files. It is particularly useful for 'pickling' nested lists and dictionaries containing numerical data arrays.

Rubi is a system for finding antiderivatives of mathematical expressions. It uses pattern-matching and a large set of currently over 6600 integration rules to solve an integration problem...

The Glasgow Fortran Source-to-Source Compiler is a source-to-source compiler that automatically refactors legacy FORTRAN77 code into modern and maintainable Fortran-95 code that is ready for...

GPUE is a GPU accelerated Gross-Pitaevskii equation solver for superfluid simulations of Bose--Einstein condensate systems with an emphasis on vortex dynamics and vortex turbulence. GPUE can...