tag:joss.theoj.org,2005:/papers/in/TclJournal of Open Source Software2024-01-29T16:38:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42112024-01-29T16:38:15Z2024-01-30T08:20:19ZChitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulationsaccepted1.02023-02-15 16:12:05 UTC932024-01-29 16:38:15 UTC920245771DavidMalaspinaInstitut de Ciencia de Materials de Barcelona (ICMAB-CSIC),Campus UAB Bellaterra, Barcelona, Spain0000-0002-5420-9534JordiFaraudoInstitut de Ciencia de Materials de Barcelona (ICMAB-CSIC),Campus UAB Bellaterra, Barcelona, Spain0000-0002-6315-499310.21105/joss.05771https://doi.org/10.5281/zenodo.3274725Tcl, Rich Text Formathttps://joss.theoj.org/papers/10.21105/joss.05771.pdfVMD, chitin polymer structure, molecular dynamics, tcltag:joss.theoj.org,2005:Paper/34642022-07-07T21:09:23Z2022-07-10T08:52:23ZNAIF PDS4 Bundler: A Python package to generate SPICE PDS4 archivesacceptedv1.1.02022-04-11 22:46:02 UTC752022-07-07 21:09:23 UTC720224327MarcCostaSitjaJet Propulsion Laboratory, California Institute of Technology, USA0000-0003-0055-295910.21105/joss.04327https://doi.org/10.5281/zenodo.6800348Python, Tcl, HCL, XChttps://joss.theoj.org/papers/10.21105/joss.04327.pdfplanetary science, data archive, SPICE, geometry, navigationtag:joss.theoj.org,2005:Paper/25922021-07-20T20:06:25Z2021-07-21T00:03:14ZCollaborative Container Modules with Singularity Registry HPCaccepted0.0.222021-04-24 00:44:09 UTC632021-07-20 20:06:25 UTC620213311VanessaSochatLawrence Livermore National Lab, Livermore, CA, USA0000-0002-4387-3819AlecScottUniversity of Arizona Research Computing, Tuscon, AZ, USA0000-0001-6255-130810.21105/joss.03311https://doi.org/10.5281/zenodo.5116598Tcl, Python, Luahttps://joss.theoj.org/papers/10.21105/joss.03311.pdfcontainers, singularity, linux, registrytag:joss.theoj.org,2005:Paper/11902019-09-19T11:48:34Z2021-02-15T11:31:41ZComputing diffusion coefficients in macromolecular simulations: the Diffusion Coefficient Tool for VMDacceptedv1.12019-08-28 13:40:19 UTC412019-09-19 11:48:34 UTC420191698ToniGiorginoInstitute of Biophysics (IBF-CNR), National Research Council of Italy0000-0001-6449-059610.21105/joss.01698https://doi.org/10.5281/zenodo.3445530Tclhttps://joss.theoj.org/papers/10.21105/joss.01698.pdfVMD, diffusion coefficient, molecular dynamics, trajectorytag:joss.theoj.org,2005:Paper/8132019-02-11T23:18:45Z2021-02-15T11:32:39ZThe Biddy BDD packageacceptedv1.8.22019-01-15 09:37:54 UTC342019-02-11 23:18:45 UTC420191189RobertMeolicFaculty of Electrical Engineering and Computer Science, University of Maribor0000-0003-3395-122710.21105/joss.01189https://doi.org/10.5281/zenodo.2561641C, Tcl, C++, HyPhyhttps://joss.theoj.org/papers/10.21105/joss.01189.pdfBoolean algebra, unate cube set algebra, binary decision diagram, zero-suppressed binary decision diagram, formal methods, free software