tag:joss.theoj.org,2005:/papers/in/RubyJournal of Open Source Software2024-03-08T22:12:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44372024-03-08T22:12:15Z2024-03-10T08:11:09ZEthome: tools for machine learning of animal behavioracceptedv0.6.02023-04-18 06:25:31 UTC952024-03-08 22:12:15 UTC920245623BenjaminLansdellDevelopmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, United States of America0000-0003-1444-1950AbbasShirinifardDevelopmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, United States of America10.21105/joss.05623https://doi.org/10.5281/zenodo.10680136Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05623.pdfsupervised-learning, deeplabcut, boris, neurodata-without-borders, pose-tracking, ndx-pose, animal-behaviortag:joss.theoj.org,2005:Paper/45912024-01-28T18:34:03Z2024-01-29T08:05:01Zmatscipy: materials science at the atomic scale with Pythonaccepted0.8.02023-07-10 11:58:56 UTC932024-01-28 18:34:03 UTC920245668PetrGrigorevAix-Marseille Université, CNRS, CINaM UMR 7325, Campus de Luminy, 13288 Marseille, France0000-0002-6409-9092LucasFrérotDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-4138-1052FraserBirksWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0009-0008-9117-0393AdrienGolaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Institute for Applied Materials, Karlsruhe Institute of Technology, Engelbert-Arnold-Straße 4, 76131 Karlsruhe, Germany0000-0002-5102-1931JacekGolebiowskiDepartment of Materials, Imperial College London, London SW7 2AZ, United Kingdom0000-0001-8053-8318JanGrießerDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-2149-6730JohannesL.HörmannDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-5867-695XAndreasKlemenzFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-5677-5639GianpietroMorasFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0002-4623-2881WolframG.NöhringDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-4203-755XJonasA.OldenstaedtDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-7475-3019PunitPatelWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United KingdomThomasReichenbachFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-7477-6248ThomasRockeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0002-4612-9112LakshmiShenoyWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-5760-3345MichaelWalterCluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-6679-2491SimonWengertFritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany0000-0002-8008-1482LeiZhangEngineering and Technology Institute Groningen, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands0000-0003-4414-7111JamesR.KermodeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-6755-6271LarsPastewkaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-8351-733610.21105/joss.05668https://doi.org/10.5281/zenodo.10564956C++, C, Meson, Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05668.pdfMaterial Science, Atomistic simulationstag:joss.theoj.org,2005:Paper/45172023-08-09T19:23:28Z2023-08-10T00:01:36ZCOOLEST: COde-independent Organized LEns STandardaccepted0.0.12023-06-01 15:37:35 UTC882023-08-09 19:23:28 UTC820235567AymericGalanInstitute of Physics, Laboratory of Astrophysics, École Polytechnique Fédérale de Lausanne (EPFL), Switzerland, Technical University of Munich, TUM School of Natural Sciences, Department of Physics, James-Franck-Strasse 1, 85748 Garching, Germany0000-0003-2547-9815LyneVan de VyvereSTAR Institute, Quartier Agora, Allée du Six Août, 19c, 4000 Liège, Belgium0000-0002-0585-4203MatthewR.GomerSTAR Institute, Quartier Agora, Allée du Six Août, 19c, 4000 Liège, Belgium0000-0001-5562-3879GeorgiosVernardosInstitute of Physics, Laboratory of Astrophysics, École Polytechnique Fédérale de Lausanne (EPFL), Switzerland, Department of Physics and Astronomy, Lehman College, City University of New York, 250 Bedford Park Boulevard West, Bronx, NY 10468-1589, USA0000-0001-8554-7248DominiqueSluseSTAR Institute, Quartier Agora, Allée du Six Août, 19c, 4000 Liège, Belgium0000-0001-6116-209510.21105/joss.05567https://doi.org/10.5281/zenodo.8207512Ruby, Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05567.pdfastronomy, gravitational lensing, lens modeling, standardtag:joss.theoj.org,2005:Paper/43032023-07-03T17:35:10Z2023-07-04T00:01:24ZOlaf: a lightweight, portable audio search systemacceptedv0.92023-03-13 15:54:35 UTC872023-07-03 17:35:10 UTC820235459JorenSixIPEM, Ghent University, Belgium0000-0001-7671-190710.21105/joss.05459https://doi.org/10.5281/zenodo.8093527C++, C, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05459.pdfAcoustic fingerprinting, Music Information Retreival, ANSI Ctag:joss.theoj.org,2005:Paper/40862023-03-14T19:50:49Z2023-08-17T10:51:59ZAtramhasis: An online SKOS vocabulary editoraccepted1.2.02022-12-14 11:18:48 UTC832023-03-14 19:50:49 UTC820235040KoenVan DaeleFlanders Heritage Agency, Belgium0000-0002-8153-2978TinneCahyGEO Solutions, BelgiumWimDe ClercqGEO Solutions, BelgiumJonasGeuensFlanders Heritage Agency, Belgium0000-0001-8197-5034BramGoessensFlanders Heritage Agency, Belgium0000-0001-6693-0866JonathanPirauxGEO Solutions, BelgiumBartSaelenGEO Solutions, BelgiumMaartenTaeymansGEO Solutions, BelgiumCedrikVanderhaegenFlanders Heritage Agency, Belgium10.21105/joss.05040https://doi.org/10.5281/zenodo.7733994Python, Mako, Ruby, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05040.pdfSKOS, thesaurus, vocabulary, linked datatag:joss.theoj.org,2005:Paper/36962022-10-11T14:53:01Z2022-10-12T00:01:03ZPanako: a scalable audio search systemaccepted2.12022-07-01 13:20:49 UTC782022-10-11 14:53:01 UTC720224554JorenSixIPEM, Ghent University, Belgium0000-0001-7671-190710.21105/joss.04554https://doi.org/10.5281/zenodo.7185611Ruby, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04554.pdfAcoustic fingerprinting, Music Information Retreival, Java softwaretag:joss.theoj.org,2005:Paper/34142022-07-04T16:42:51Z2022-07-05T09:52:59ZDMT-core: A Python Toolkit for Semiconductor Device Engineersaccepted1.4.02022-03-08 09:40:24 UTC752022-07-04 16:42:51 UTC720224298MarioKrattenmacherCEDIC, TU Dresden, 01062 Dresden, Germany;, SemiMod GmbH, 01159 Dresden, Germany0000-0003-1274-3429MarkusMüllerCEDIC, TU Dresden, 01062 Dresden, Germany;, SemiMod GmbH, 01159 Dresden, Germany0000-0003-1058-1649PascalKutheCEDIC, TU Dresden, 01062 Dresden, Germany;, SemiMod GmbH, 01159 Dresden, GermanyMichaelSchröterCEDIC, TU Dresden, 01062 Dresden, Germany;, SemiMod GmbH, 01159 Dresden, Germany10.21105/joss.04298https://doi.org/10.5281/zenodo.6685185Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.04298.pdfcircuit simulation, compact modeling, electrical engineering, measurement data, open source, TCAD simulationtag:joss.theoj.org,2005:Paper/31052022-02-10T03:20:12Z2022-02-11T00:01:15ZCHAMP is a HPC Access and Metadata Portalacceptedv2.0.02021-10-11 16:17:22 UTC702022-02-10 03:20:12 UTC720223824ChristopherCave-AylandImperial College London, Research Computing Service0000-0003-0942-8030MichaelBearparkImperial College London, Department of Chemistry0000-0002-1117-7536CharlesRomainImperial College London, Department of Chemistry0000-0002-1851-8612HenryS.RzepaImperial College London, Department of Chemistry0000-0002-8635-839010.21105/joss.03824https://doi.org/10.5281/zenodo.6026417Python, Ruby, DIGITAL Command Languagehttps://joss.theoj.org/papers/10.21105/joss.03824.pdfHigh Performance Computing, Metadatatag:joss.theoj.org,2005:Paper/30132021-11-30T18:19:17Z2021-12-01T00:02:35ZNextclade: clade assignment, mutation calling and quality control for viral genomesacceptedv1.3.02021-09-03 13:36:34 UTC672021-11-30 18:19:17 UTC620213773IvanAksamentovBiozentrum, University of Basel, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland0000-0002-7557-9673CorneliusRoemerBiozentrum, University of Basel, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland0000-0002-6138-6539EmmaB.HodcroftSwiss Institute of Bioinformatics, Basel, Switzerland, Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland0000-0002-0078-2212RichardA.NeherBiozentrum, University of Basel, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland0000-0003-2525-140710.21105/joss.03773https://doi.org/10.5281/zenodo.5726681Ruby, C++https://joss.theoj.org/papers/10.21105/joss.03773.pdfphylogenetics, typing, sequence alignmenttag:joss.theoj.org,2005:Paper/26192021-06-08T18:25:11Z2021-06-09T14:52:22Zlenstronomy II: A gravitational lensing software ecosystemacceptedv1.8.12021-05-03 14:43:40 UTC622021-06-08 18:25:11 UTC620213283SimonBirrerKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0003-3195-5507AnowarJ.ShajibDepartment of Astronomy & Astrophysics, University of Chicago, Chicago, IL 60637, USA, Department of Physics and Astronomy, University of California, Los Angeles, CA 90095, USA0000-0002-5558-888XDanielGilmanDepartment of Astronomy and Astrophysics, University of Toronto, 50 St. George Street, Toronto, ON, M5S 3H4, Canada0000-0002-5116-7287AymericGalanInstitute of Physics, Laboratory of Astrophysics, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland0000-0003-2547-9815JelleAalbersKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0003-0030-0030MartinMillonInstitute of Physics, Laboratory of Astrophysics, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland0000-0001-7051-497XRobertMorganPhysics Department, University of Wisconsin-Madison, 1150 University Avenue Madison, WI 53706, USA, Legacy Survey of Space and Time Corporation Data Science Fellowship Program, USA0000-0002-7016-5471GiuliaPaganoIndependent Researcher0000-0002-3636-0767JiWonParkKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0002-0692-1092LucaTeodoriWeizmann Institute, 234 Herzl Street, Rehovot, 7610001 IsraelNicolasTessoreDepartment of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK0000-0002-9696-7931MadisonUelandKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USALyneVan de VyvereSTAR Institute, Université de Liège, Quartier Agora - Allée du six Août, 19c, B-4000 Liège, Belgium0000-0002-0585-4203SebastianWagner-CarenaKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0001-5039-1685EwoudWempeKapteyn Astronomical Institute, University of Groningen, PO Box 800, 9700 AV Groningen, the Netherlands0000-0001-8232-4188LilanYangSchool of Physics and Technology, Wuhan University, Wuhan 430072, China0000-0002-8434-880XXuhengDingKavli IPMU (WPI), UTIAS, The University of Tokyo, Kashiwa, Chiba 277-8583, Japan0000-0001-8917-2148ThomasSchmidtDepartment of Physics and Astronomy, University of California, Los Angeles, CA 90095, USA0000-0002-2772-8160DominiqueSluseSTAR Institute, Université de Liège, Quartier Agora - Allée du six Août, 19c, B-4000 Liège, Belgium0000-0001-6116-2095MingZhangXinjiang Astronomical Observatory, Chinese Academy of Sciences, 150 Science 1-Street, Urumqi 831001, ChinaAdamAmaraInstitute of Cosmology and Gravitation, University of Portsmouth, Portsmouth PO1 3FX, UK0000-0003-3481-349110.21105/joss.03283https://doi.org/10.5281/zenodo.4913700Ruby, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03283.pdfastronomy, gravitational lensing, image simulations, dynamics