tag:joss.theoj.org,2005:/papers/in/RoffJournal of Open Source Software2023-10-31T15:03:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42052023-10-31T15:03:59Z2023-11-01T00:00:33ZPeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cyclingacceptedv23.022023-02-14 00:23:22 UTC902023-10-31 15:03:59 UTC820235450LucasEsclapezHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-2438-7292MarcDayHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-1711-3963JohnBellCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0002-5749-334XAnneFeldenCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0009-0006-2724-4461CandaceGiletIndependent Researcher, USARayGroutHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-1760-8747MarcHenryde FrahanHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0001-7742-1565EmmanuelMotheauCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0003-1968-1611AndrewNonakaCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0003-1791-0265LandonOwenSandia National Laboratory, USABrucePerryHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-9150-8103JonRoodHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-7513-3225NicolasWimerHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0001-5083-0799WeiqunZhangCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0001-8092-197410.21105/joss.05450https://doi.org/10.5281/zenodo.10056232C++, Roffhttps://joss.theoj.org/papers/10.21105/joss.05450.pdfadaptive mesh refinement, hydrodynamics, combustion, reactions, ExaScale, CFD, low-Mach numbertag:joss.theoj.org,2005:Paper/39542023-07-12T12:43:05Z2023-07-13T00:01:26Zsfctools - A toolbox for stock-flow consistent, agent-based modelsaccepted1.0.02022-10-11 19:54:56 UTC872023-07-12 12:43:05 UTC820234980ThomasBaldaufGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0002-9119-741310.21105/joss.04980https://doi.org/10.5281/zenodo.8118870Python, Roffhttps://joss.theoj.org/papers/10.21105/joss.04980.pdfAgent-Based Modeling, Stock-Flow Consistent Modeling, User Interface, Economicstag:joss.theoj.org,2005:Paper/36692022-12-20T15:33:58Z2023-01-12T10:13:48ZGNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVEaccepted1.02022-06-21 15:21:01 UTC802022-12-20 15:33:58 UTC720224633JeongbinParkSchool of Biomedical Convergence Engineering, Pusan National University, Republic of Korea0000-0002-9064-4912GillesDuvertUniv. Grenoble Alpes, CNRS, IPAG, 38000 Grenoble, France0000-0001-8769-3660AlainCoulaisLERMA, Observatoire de Paris, CNRS, Paris, France, AIM, CEA, CNRS, Université Paris-Saclay, Université Paris Diderot, Sorbonne Paris Cité, Gif-sur-Yvette, France0000-0001-6492-7719GregoryV.JungIndependent Researcher, USASylwesterArabasJagiellonian University, Kraków, Poland, University of Illinois at Urbana–Champaign, USA0000-0003-2361-0082BrianBarkerUrsinus College, PA, USATakeshiEnomotoKyoto University, JapanSylvainFlinoisKumullus, Paris, FranceOliverGresselLeibniz-Institut für Astrophysik Potsdam (AIP), Potsdam, GermanyTomasHillbergDepartment of Astronomy, Stockholm University, SwedenThibaultHuilletIndependent Researcher, FranceJanKohnertIndependent Researcher, GermanyOrionPoplawskiNorthWest Research Associates, Boulder, CO, USAEloiRozierde LinageLERMA, Observatoire de Paris, CNRS, Paris, FranceRemiA.SolåsIndependent Researcher, NorwayLukeStagnerGeneral Atomics, San Diego, CA, USA0000-0001-5516-3729OleStreicherLeibniz-Institut für Astrophysik Potsdam (AIP), Potsdam, Germany0000-0001-7751-1843JamesTappinRAL Space, STFC Rutherford Appleton Laboratory, UKThierryThomasEDF, Lyon, FranceJingweiWangMINES ParisTech, Paris, FranceChristianWimmerIndependent Researcher, Germany10.21105/joss.04633https://doi.org/10.5281/zenodo.7275468Roff, IDL, C++https://joss.theoj.org/papers/10.21105/joss.04633.pdfGNU Data Language, Interactive Data Language, GDL, PV-WAVEtag:joss.theoj.org,2005:Paper/38272022-12-01T10:12:36Z2022-12-02T00:01:03ZShakeNBreak: Navigating the defect configurational landscapeacceptedv1.0.02022-08-22 16:04:43 UTC802022-12-01 10:12:36 UTC720224817IreaMosquera-LoisThomas Young Centre and Department of Chemistry, University College London, United Kingdom0000-0001-7651-0814SeánR.KavanaghThomas Young Centre and Department of Chemistry, University College London, United Kingdom, Thomas Young Centre and Department of Materials, Imperial College London, United Kingdom0000-0003-4577-9647AronWalshThomas Young Centre and Department of Materials, Imperial College London, United Kingdom0000-0001-5460-7033DavidO.ScanlonThomas Young Centre and Department of Chemistry, University College London, United Kingdom0000-0001-9174-860110.21105/joss.04817https://doi.org/10.5281/zenodo.7377173Python, Roffhttps://joss.theoj.org/papers/10.21105/joss.04817.pdfpoint defects, structure searching, symmetry breaking, distortions, semiconductors, ab initiotag:joss.theoj.org,2005:Paper/29142022-08-01T11:06:24Z2022-08-02T00:01:03ZCleanX: A Python library for data cleaning of large sets of radiology imagesacceptedv0.1.92021-07-31 07:04:37 UTC762022-08-01 11:06:24 UTC720223632CandaceMakedaMooreNetherlands eScience Center, Amsterdam, Netherlands0000-0003-1672-7565AndrewMurphyDepartment of Medical Imaging, Princess Alexandra Hospital, Brisbane, QLD, Australia0000-0002-7710-6095OlegSivokonBright Computing / NVIDIA, NetherlandsPatriceJ.MusokeTemple University0000-0002-8379-513010.21105/joss.03632https://doi.org/10.5281/zenodo.6331739Roff, Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03632.pdfradiology, imaging, medical imagingtag:joss.theoj.org,2005:Paper/34572022-06-26T07:46:52Z2022-06-27T00:00:38ZA-SLOTH: Ancient Stars and Local Observables by Tracing Halosacceptedv1.02022-04-06 11:28:21 UTC742022-06-26 07:46:52 UTC720224417MattisMaggInstitut für Theoretische Astrophysik, Universität Heidelberg, Germany, International Max Planck Research School for Astronomy and Cosmic Physics, University of Heidelberg (IMPRS-HD), Germany0000-0002-9022-5136TilmanHartwigInstitute for Physics of Intelligence, The University of Tokyo, Japan, Department of Physics, The University of Tokyo, Japan, Kavli Institute for the Physics and Mathematics of the Universe (WPI), The University of Tokyo, Japan0000-0001-6742-8843Li-HsinChenInstitut für Theoretische Astrophysik, Universität Heidelberg, Germany, International Max Planck Research School for Astronomy and Cosmic Physics, University of Heidelberg (IMPRS-HD), GermanyYutaTarumiDepartment of Physics, The University of Tokyo, Japan0000-0002-9801-778810.21105/joss.04417https://doi.org/10.5281/zenodo.6683682Roff, Fortran, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04417.pdfPopulation III Stars, Semi-Analyticaltag:joss.theoj.org,2005:Paper/31242022-02-14T21:58:33Z2022-02-15T00:00:59ZIntracranial Electrode Location and Analysis in MNE-Pythonaccepted0.24.dev02021-10-22 00:58:31 UTC702022-02-14 21:58:33 UTC720223897AlexanderP.RockhillDepartment of Human Physiology, University of Oregon, Eugene OR, USA0000-0003-3868-7453EricLarsonInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-4782-5360BrittanyStedelinDepartment of Neurological Surgery, Oregon Health & Science University, Portland, Oregon0000-0001-5368-4299AlessandraMantovaniDepartment of Neurological Surgery, Oregon Health & Science University, Portland, OregonAhmedM.RaslanDepartment of Neurological Surgery, Oregon Health & Science University, Portland, Oregon0000-0002-8421-7105AlexandreGramfortUniversité Paris-Saclay, Inria, CEA, Palaiseau, France0000-0001-9791-4404NicoleC.SwannDepartment of Human Physiology, University of Oregon, Eugene OR, USA0000-0003-2463-513410.21105/joss.03897https://doi.org/10.5281/zenodo.6047183Python, Csound Document, Roffhttps://joss.theoj.org/papers/10.21105/joss.03897.pdfBIDS, MNE, neuroimaging, iEEG, sEEG, ECoGtag:joss.theoj.org,2005:Paper/28162021-08-20T20:59:21Z2021-08-21T00:00:36ZThe MarINvaders Toolkitacceptedv0.3.12021-06-23 12:41:05 UTC642021-08-20 20:59:21 UTC620213575RadekLonkaIndustrial Ecology Programme, NTNU Trondheim, Norway.0000-0002-5815-8682FrancescaVeronesIndustrial Ecology Programme, NTNU Trondheim, Norway.0000-0002-2908-328XKonstantinStadlerIndustrial Ecology Programme, NTNU Trondheim, Norway.0000-0002-1548-201X10.21105/joss.03575https://doi.org/10.5281/zenodo.4621392Python, Roffhttps://joss.theoj.org/papers/10.21105/joss.03575.pdfinvasive species, marine biodiversity, ecosystems, alienstag:joss.theoj.org,2005:Paper/9672019-06-14T15:23:32Z2021-02-15T11:32:16ZSCONE: Open Source Software for Predictive Simulation of Biological Motionacceptedv1.0.02019-04-19 14:32:06 UTC382019-06-14 15:23:32 UTC420191421ThomasGeijtenbeekDelft University of Technology, Delft, The Netherlands0000-0001-8352-810710.21105/joss.01421https://doi.org/10.5281/zenodo.3245810Roffhttps://joss.theoj.org/papers/10.21105/joss.01421.pdfpredictive simulation, biomechanical modeling, neuromuscular control, optimization, data visualizationtag:joss.theoj.org,2005:Paper/8922019-02-17T02:00:59Z2021-02-15T11:32:31Ztqdm: A Fast, Extensible Progress Meter for Python and CLIretractedv4.31.12019-02-17 02:00:59 UTC