tag:joss.theoj.org,2005:/papers/in/R?page=5Journal of Open Source Software2023-08-01T15:14:10ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/43022023-08-01T15:14:10Z2023-08-02T00:01:42ZShiny tools for management rules: interactive applications that aid in conservation strategies for North Atlantic right whalesacceptedv1.0.02023-03-11 04:50:58 UTC882023-08-01 15:14:10 UTC820235436LeahM.CroweIntegrated Statistics under contract to the Northeast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, USA0000-0001-9133-8522TimV. n.ColeNortheast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, USA0000-0001-9046-2169HeatherJ.FoleyIntegrated Statistics under contract to the Northeast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, USA0000-0003-0898-3008DanielleM.CholewiakNortheast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, USA10.21105/joss.05436https://doi.org/10.5281/zenodo.8127594R, Standard MLhttps://joss.theoj.org/papers/10.21105/joss.05436.pdfright whales, trigger analysis, conservation, managementtag:joss.theoj.org,2005:Paper/43042023-07-25T13:47:54Z2023-07-26T00:01:19Zrempsyc: Convenience functions for psychologyacceptedv0.1.1.22023-03-13 20:45:09 UTC872023-07-25 13:47:54 UTC820235466RémiThériaultDepartment of Psychology, Université du Québec à Montréal, Québec, Canada0000-0003-4315-678810.21105/joss.05466https://doi.org/10.5281/zenodo.8169295Rhttps://joss.theoj.org/papers/10.21105/joss.05466.pdfpsychology, statistics, visualizationtag:joss.theoj.org,2005:Paper/41612023-07-22T03:05:19Z2023-07-23T00:01:35ZBridgeStan: Efficient in-memory access to the methods of a Stan modelacceptedv.1.0.02023-01-10 21:55:16 UTC872023-07-22 03:05:19 UTC820235236EdwardA.RoualdesCalifornia State University, Chico0000-0002-8757-3463BrianWardCenter for Computational Mathematics, Flatiron Institute0000-0002-9841-3342BobCarpenterCenter for Computational Mathematics, Flatiron Institute0000-0002-2433-9688AdrianSeyboldtPyMC Labs0000-0002-4239-4541SethD.AxenCluster of Excellence Machine Learning: New Perspectives for Science, University of Tübingen0000-0003-3933-824710.21105/joss.05236https://doi.org/10.5281/zenodo.8169248R, C, Juliahttps://joss.theoj.org/papers/10.21105/joss.05236.pdfStan, Python, Rust, C++, automatic differentiationtag:joss.theoj.org,2005:Paper/44522023-07-07T21:09:58Z2023-07-08T00:01:48ZiTensor: An R package for independent component analysis-based matrix/tensor decompositionacceptedv1.0.02023-04-26 12:46:06 UTC872023-07-07 21:09:58 UTC820235496KokiTsuyuzakiDepartment of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Japan, Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research, Japan0000-0003-3797-214810.21105/joss.05496https://doi.org/10.5281/zenodo.8080600Rhttps://joss.theoj.org/papers/10.21105/joss.05496.pdfindependent component analysis, multimodal independent component analysis, group independent component analysis, multilinear independent component analysis, dimension reductiontag:joss.theoj.org,2005:Paper/43822023-06-26T19:52:42Z2023-06-30T13:27:07Ztehtuner: An R package to fit and tune models for the conditional average treatment effectacceptedv0.3.02023-04-02 04:08:10 UTC862023-06-26 19:52:42 UTC820235453JackM.WolfUniversity of Minnesota Division of Biostatistics, United States of America0000-0002-8919-874010.21105/joss.05453https://doi.org/10.5281/zenodo.8018280Rhttps://joss.theoj.org/papers/10.21105/joss.05453.pdfcausal inference, clinical trialstag:joss.theoj.org,2005:Paper/36682023-06-22T18:20:23Z2023-06-23T00:01:38ZThe sspm R package for spatially-explicit surplus production population modelsacceptedv0.9.12022-06-21 14:30:02 UTC862023-06-22 18:20:23 UTC820234724ValentinLucetDepartment of Biology, Concordia University, Montreal, CA0000-0003-0268-818XEricJ.PedersenDepartment of Biology, Concordia University, Montreal, CA, Department of Biology, Memorial University of Newfoundland, St. John's, CA0000-0003-1016-540X10.21105/joss.04724https://doi.org/10.5281/zenodo.8015102Rhttps://joss.theoj.org/papers/10.21105/joss.04724.pdffisheries, management, modelling, GAMtag:joss.theoj.org,2005:Paper/42902023-06-21T14:30:22Z2023-06-22T00:01:26Zminorbsem: An R package for structural equation models that account for the influence of minor factorsacceptedv0.1.02023-03-08 16:54:31 UTC862023-06-21 14:30:22 UTC820235292JamesOhiseiUanhoroDepartment of Educational Psychology, University of North Texas, USA0000-0002-4843-927X10.21105/joss.05292https://doi.org/10.5281/zenodo.8057759R, Stan, C++https://joss.theoj.org/papers/10.21105/joss.05292.pdfBayesian-statistics, latent-variable-models, structural-equation-modeling, psychometrics, meta-analytic-SEMtag:joss.theoj.org,2005:Paper/44362023-06-10T12:39:03Z2023-06-12T07:55:31ZReference Point Calculator (RPC): A Shiny app for exploration of limit reference points for fisheries managementaccepted0.4.02023-04-17 20:07:34 UTC862023-06-10 12:39:03 UTC820235418QuangC.HuynhBlue Matter Science, North Vancouver, BC, Canada0000-0001-7835-4376TomR.CarruthersBlue Matter Science, North Vancouver, BC, Canada0000-0001-9173-9043AdrianR.HordykBlue Matter Science, North Vancouver, BC, Canada0000-0001-5620-344610.21105/joss.05418https://doi.org/10.5281/zenodo.8000031R, Less, SCSShttps://joss.theoj.org/papers/10.21105/joss.05418.pdfreference points, population dynamics, fisheries science, management strategy evaluationtag:joss.theoj.org,2005:Paper/42832023-05-31T15:00:40Z2023-06-01T00:01:32Zshoredate: An R package for shoreline dating coastal Stone Age sitesacceptedv1.0.12023-03-06 22:48:39 UTC852023-05-31 15:00:40 UTC820235337IsakRoalkvamUniversity of Oslo, Institute of Archaeology, Conservation and History0000-0001-6974-137410.21105/joss.05337https://doi.org/10.5281/zenodo.7971859Rhttps://joss.theoj.org/papers/10.21105/joss.05337.pdfarchaeology, shoreline dating, relative sea-level change, south-eastern Norwaytag:joss.theoj.org,2005:Paper/41872023-05-30T10:10:11Z2023-05-31T00:01:19ZproteoDA: a package for quantitative proteomicsacceptedv1.0.02023-02-02 15:47:05 UTC852023-05-30 10:10:11 UTC820235184TimothyJ.ThurmanDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-9602-6226CharityL.WashamDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-5761-9304DuahAlkamDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-5965-7694JordanT.BirdDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-5753-6058AllenGiesDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0003-2492-0429KalyaniDhusiaDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0002-8803-1295MichaelS.RobesonDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA0000-0001-7119-6301StephanieD.ByrumDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA, Arkansas Children's Research Institute, Little Rock, AR, USA0000-0002-1783-361010.21105/joss.05184https://doi.org/10.5281/zenodo.7962306R, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05184.pdfmass spectrometry, intensity data, normalization, linear models