tag:joss.theoj.org,2005:/papers/in/Matlab?page=4Journal of Open Source Software2019-07-31T06:43:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/11062019-07-31T06:43:59Z2021-02-15T11:31:57ZSG-t-SNE-Π: Swift Neighbor Embedding of Sparse Stochastic Graphsacceptedv1.0.02019-07-14 22:54:07 UTC392019-07-31 06:43:59 UTC420191577NikosPitsianisDepartment of Electrical and Computer Engineering, Aristotle University of Thessaloniki, Thessaloniki 54124, Greece, Department of Computer Science, Duke University, Durham, NC 27708, USA0000-0002-7353-3524DimitrisFlorosDepartment of Electrical and Computer Engineering, Aristotle University of Thessaloniki, Thessaloniki 54124, Greece0000-0003-1190-4075Alexandros-StavrosIliopoulosDepartment of Computer Science, Duke University, Durham, NC 27708, USA0000-0002-1959-9792XiaobaiSunDepartment of Computer Science, Duke University, Durham, NC 27708, USA10.21105/joss.01577https://doi.org/10.5281/zenodo.3355679C++, C, Matlabhttps://joss.theoj.org/papers/10.21105/joss.01577.pdfgraph embedding, stochastic neighbor embedding, t-SNE, data analysis, machine learningtag:joss.theoj.org,2005:Paper/9222019-06-27T20:12:21Z2021-02-15T11:32:25ZVBLinLogit: Variational Bayesian linear and logistic regressionacceptedv0.22019-03-10 21:26:03 UTC382019-06-27 20:12:21 UTC420191359JanDrugowitschDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115, USA0000-0002-7846-040810.21105/joss.01359https://doi.org/10.5281/zenodo.3255135Matlabhttps://joss.theoj.org/papers/10.21105/joss.01359.pdfMATLAB, Octave, linear regression, logistic regression, Variational Bayestag:joss.theoj.org,2005:Paper/8332019-06-13T00:02:33Z2021-02-15T11:32:36ZHCP: A Matlab package to create beautiful heatmaps with richly annotated covariatesacceptedv0.12019-01-26 21:37:31 UTC382019-06-13 00:02:33 UTC420191291ManuelaSalvucciCentre for Systems Medicine, Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland0000-0001-9941-4307JochenH. m.PrehnCentre for Systems Medicine, Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland0000-0003-3479-779410.21105/joss.01291https://doi.org/10.5281/zenodo.3242593Matlabhttps://joss.theoj.org/papers/10.21105/joss.01291.pdfMATLAB, HeatmapCovariatePlot, annotated heatmap, data visualization, data exploration, multivariate plottingtag:joss.theoj.org,2005:Paper/8492019-05-23T16:24:03Z2021-02-15T11:32:33ZOptimising Light Source Positioning for Even and Flux-Efficient Illuminationaccepted1.02019-02-07 18:53:49 UTC372019-05-23 16:24:03 UTC420191392NiamhMacFhionnlaoichDepartment of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, U.K.0000-0001-8459-9994AlaricTaylorDepartment of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, U.K.0000-0001-6494-8309StefanGuldinDepartment of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, U.K.0000-0002-4413-552710.21105/joss.01392https://doi.org/10.5281/zenodo.2847905Matlabhttps://joss.theoj.org/papers/10.21105/joss.01392.pdfEven Illumination, Modelling Illuminationtag:joss.theoj.org,2005:Paper/6662019-05-20T13:12:29Z2021-02-15T11:32:53ZEMViz (Early Music Visualization): MATLAB runtime applicationacceptedv1.0.02018-10-16 14:08:29 UTC372019-05-20 13:12:29 UTC420191094AaronCarter-ÉnyìAssistant Professor, Morehouse College, Instructor, Spelman College, Fellow, Fulbright Scholar Program, Project Director, Algorithmic Thinking, Analysis and Visualization in Music (ATAVizM)0000-0003-2614-477710.21105/joss.01094https://doi.org/10.5281/zenodo.3051781Matlab, Mhttps://joss.theoj.org/papers/10.21105/joss.01094.pdfMATLAB, music, arc diagrams, visualization, MIDItag:joss.theoj.org,2005:Paper/7172019-03-29T11:21:29Z2021-02-15T11:32:50Zidvf: Iterative Inversion of Deformation Vector Field with Adaptive Bi-residual Feedback Controlacceptedv1.0.02018-11-02 00:23:09 UTC352019-03-29 11:21:29 UTC420191076Alexandros-StavrosIliopoulosDepartment of Computer Science, Duke University, Durham, NC 27708, USA0000-0002-1959-9792AbhishekDubeyDepartment of Computer Science, Duke University, Durham, NC 27708, USA0000-0001-8052-7416XiaobaiSunDepartment of Computer Science, Duke University, Durham, NC 27708, USA10.21105/joss.01076https://doi.org/10.5281/zenodo.2610844Matlabhttps://joss.theoj.org/papers/10.21105/joss.01076.pdfdeformation vector field, optical flow, deformable registration, fixed-point iteration, inverse consistency, adaptive feedback control, medical image analysis, computer vision, MATLABtag:joss.theoj.org,2005:Paper/7372019-03-10T12:55:04Z2021-02-15T11:32:46ZThe SuiteSparse Matrix Collection Website InterfaceacceptedJOSS-1.0.02018-11-28 00:52:22 UTC352019-03-10 12:55:04 UTC420191244ScottP.KolodziejTexas A&M University, Department of Computer Science & Engineering, College Station, TX0000-0001-8340-0824MohsenAznavehTexas A&M University, Department of Computer Science & Engineering, College Station, TX0000-0003-4860-4762MatthewBullockTexas A&M University, Department of Computer Science & Engineering, College Station, TXJarrettDavidTexas A&M University, Department of Computer Science & Engineering, College Station, TX0000-0002-1491-0393TimothyA.DavisTexas A&M University, Department of Computer Science & Engineering, College Station, TX0000-0001-7614-6899MatthewHendersonTexas A&M University, Department of Computer Science & Engineering, College Station, TXYifanHuYahoo Research, New York, NY0000-0003-2017-924XReadSandstromTexas A&M University, Department of Computer Science & Engineering, College Station, TX0000-0001-9205-152310.21105/joss.01244https://doi.org/10.6084/m9.figshare.7381076Ruby, JavaScript, Matlabhttps://joss.theoj.org/papers/10.21105/joss.01244.pdfdata repository, sparse matrices, website, web applicationtag:joss.theoj.org,2005:Paper/7212019-02-19T02:29:11Z2021-02-15T11:32:49ZIDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networksacceptedv.0.4.02018-11-11 16:41:12 UTC342019-02-19 02:29:11 UTC420191081PatriciaWollstadtMEG Unit, Brain Imaging Center, Goethe-University Frankfurt, Fankfurt am Main, Germany0000-0002-7105-5207JosephT.LizierCentre for Complex Systems, Faculty of Engineering and IT, The University of Sydney, Sydney, Australia0000-0002-9910-8972RaulVicenteComputational Neuroscience Lab, Institute of Computer Science, Tartu, Estonia0000-0002-7894-6213ConorFinnCentre for Complex Systems, Faculty of Engineering and IT, The University of Sydney, Sydney, Australia, Data61, CSIRO, Epping, Australia0000-0001-8542-4205MarioMartinez-ZarzuelaCommunications and Signal Theory and Telematics Engineering, University of Valladolid, Valladolid, Spain0000-0002-6866-3316PedroMedianoComputational Neurodynamics Group, Department of Computing, Imperial College London, London, United Kingdom0000-0003-1789-5894LeonardoNovelliCentre for Complex Systems, Faculty of Engineering and IT, The University of Sydney, Sydney, Australia0000-0002-6081-3367MichaelWibralMEG Unit, Brain Imaging Center, Goethe-University Frankfurt, Fankfurt am Main, Germany, Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany, Campus Institute for Dynamics of Biological Networks, Georg-August Universität, Göttingen, Germany0000-0001-8010-586210.21105/joss.01081https://doi.org/10.5281/zenodo.2554339Python, C, Matlab, Cudahttps://joss.theoj.org/papers/10.21105/joss.01081.pdfinformation theory, network inference, multivariate transfer entropy, mutual information, active information storage, partial information decompositiontag:joss.theoj.org,2005:Paper/5392019-01-21T16:45:37Z2021-02-15T11:33:15ZCusToM: a Matlab toolbox for musculoskeletal simulationacceptedv1.02018-07-04 12:12:55 UTC332019-01-21 16:45:37 UTC42019927AntoineMullerUniv Rennes, CNRS, Inria, IRISA - UMR 6074, F-35000 Rennes, France0000-0003-2606-1429CharlesPontonnierUniv Rennes, CNRS, Inria, IRISA - UMR 6074, F-35000 Rennes, France, Centre de Recherche des Ecoles de Saint-Cyr Coëtquidan, 56380 Guer, France0000-0003-1140-3772PierrePuchaudUniv Rennes, CNRS, Inria, IRISA - UMR 6074, F-35000 Rennes, France, Centre de Recherche des Ecoles de Saint-Cyr Coëtquidan, 56380 Guer, France, Univ Rennes, M2S - EA 1274, 35170 Bruz, France0000-0002-9335-630XGeorgesDumontUniv Rennes, CNRS, Inria, IRISA - UMR 6074, F-35000 Rennes, France0000-0002-0709-092110.21105/joss.00927https://doi.org/10.5281/zenodo.2543645Matlabhttps://joss.theoj.org/papers/10.21105/joss.00927.pdfmotion analysis, subject-specific, kinematics, dynamics, muscle forces, ground reaction forces predictiontag:joss.theoj.org,2005:Paper/7202019-01-21T12:28:10Z2021-02-15T11:32:49ZA MATLAB toolbox to detect and analyze marine heatwavesacceptedv1.02018-11-08 02:46:21 UTC332019-01-21 12:28:10 UTC420191124ZijieZhaoSchool of Earth Sciences, The University of Melbourne, Melbourne, Victoria, Australia, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia, Australian Research Council Centre of Excellence for Climate System Science, Hobart, Tasmania, Australia, College of Oceanic and Atmospheric Sciences, Ocean University of China, Qingdao, China0000-0003-3403-878XMaximeMarinInstitute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia, Australian Research Council Centre of Excellence for Climate System Science, Hobart, Tasmania, Australia, CSIRO Oceans & Atmosphere, Indian Ocean Marine Research Centre, Crawley 6009, Western Australia, Australia0000-0001-7209-445410.21105/joss.01124https://doi.org/10.5281/zenodo.2545437Matlab, M, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01124.pdfMATLAB, heatwaves, extremes, ocean