tag:joss.theoj.org,2005:/papers/in/Mathematica?page=1Journal of Open Source Software2024-02-21T08:51:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/43002024-02-21T08:51:15Z2024-02-23T09:04:14ZReducing the efforts to create reproducible analysis code with FieldTripacceptedhttps://github.com/fieldtrip/fieldtrip/commit/9cfc0a7e7b7871a1d9938552ce60041c59f3a5532023-03-10 17:12:47 UTC942024-02-21 08:51:15 UTC920245566MatsW.j.van EsDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, United Kingdom, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom0000-0002-7133-509XEelkeSpaakDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0002-2018-3364Jan-MathijsSchoffelenDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0003-0923-6610RobertOostenveldDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, NatMEG, Karolinska Institutet, Stockholm, Sweden0000-0002-1974-129310.21105/joss.05566https://doi.org/10.5281/zenodo.10495308MATLAB, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.05566.pdfFieldTrip Toolbox, reproducibility, analysis pipeline, open science, MEG, EEGtag:joss.theoj.org,2005:Paper/38452023-01-08T20:38:49Z2023-01-09T00:01:20ZIGraph/M: graph theory and network analysis for Mathematicaaccepted0.6.22022-08-30 10:02:13 UTC812023-01-08 20:38:49 UTC820234899SzabolcsHorvátMax Planck Institute for Cell Biology and Genetics, Dresden, Germany \newline, Center for Systems Biology Dresden, Dresden, Germany \newline0000-0002-3100-523XJakubPodkalickiIndependent Developer, Poland \newlineGáborCsárdiRStudio \newline0000-0001-7098-9676TamásNepuszIndependent Developer, Hungary \newline0000-0002-1451-338XVincentTraagCentre for Science and Technology Studies, Leiden University, Leiden, Netherlands \newline0000-0003-3170-3879FabioZaniniLowy Cancer Research Centre, University of New South Wales, Kensington, NSW, Australia \newline0000-0001-7097-8539DanielNoomIndependent Developer, Netherlands \newline10.21105/joss.04899https://doi.org/10.5281/zenodo.7469228Mathematica, M, C++, Chttps://joss.theoj.org/papers/10.21105/joss.04899.pdfWolfram Language, graph theory, network analysistag:joss.theoj.org,2005:Paper/31342022-08-26T09:42:35Z2022-08-27T00:01:20Zpyprop8: A lightweight code to simulate seismic observables in a layered half-spaceacceptedv1.02021-10-26 13:25:42 UTC762022-08-26 09:42:35 UTC720224217AndrewP.ValentineDepartment of Earth Sciences, Durham University.0000-0001-6134-9351MalcolmSambridgeResearch School of Earth Sciences, The Australian National University.0000-0003-2858-317510.21105/joss.04217https://doi.org/10.5281/zenodo.7019949Mathematica, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04217.pdfseismology, earthquakestag:joss.theoj.org,2005:Paper/36492022-08-03T05:35:20Z2022-08-04T00:00:36Zxtal2png: A Python package for representing crystal structure as PNG filesacceptedv0.4.02022-06-09 06:06:03 UTC762022-08-03 05:35:20 UTC720224528SterlingG.BairdMaterials Science & Engineering, University of Utah, USA0000-0002-4491-6876KevinM.JablonkaLaboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimique, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-4894-4660MichaelD.AlversonMaterials Science & Engineering, University of Utah, USA, Computer Science, University of Southern California, USA0000-0002-4857-7584HasanM.SayeedMaterials Science & Engineering, University of Utah, USA0000-0002-6583-7755MohammedFarisKhanMaterials Science & Engineering, University of Utah, USA0000-0001-7527-6368ColtonSeegmillerComputer Science, Utah Valley University, USA0000-0001-9511-2918BerendSmitLaboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimique, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-4653-8562TaylorD.SparksMaterials Science & Engineering, University of Utah, USA0000-0001-8020-771110.21105/joss.04528https://doi.org/10.5281/zenodo.6941663Mathematica, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04528.pdfmaterials informatics, crystal structure, computer vision, image-based predictionstag:joss.theoj.org,2005:Paper/29172021-12-10T15:46:09Z2022-01-10T18:52:40ZGRChombo: An adaptable numerical relativity code for fundamental physicsacceptedv1.0.02021-08-03 11:05:56 UTC682021-12-10 15:46:09 UTC620213703TomasAndradeDepartament de Fısica Quantica i Astrofisica, Institut de Ciencies del Cosmos, Universitat de Barcelona, Marti i Franques 1, 08028 Barcelona, Spain0000-0002-2472-114XLlibertAresteSaloSchool of Mathematical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom0000-0002-3812-8523JosuC.AurrekoetxeaTheoretical Particle Physics and Cosmology, King's College London, Strand, London, WC2R 2LS, United Kingdom0000-0001-9584-5791JamieBamberAstrophysics, Oxford University, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH, United Kingdom0000-0001-7181-3365KatyCloughAstrophysics, Oxford University, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH, United Kingdom0000-0001-8841-1522RobinCroftDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0002-1236-6566Eloyde JongTheoretical Particle Physics and Cosmology, King's College London, Strand, London, WC2R 2LS, United Kingdom0000-0002-4505-0808AmeliaDrewDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0001-8252-602XAlejandroDuranIntel Iberia, Torre Picasso Plaza Pablo Ruiz Picasso 1 Madrid, 28020 SpainPedroG.FerreiraAstrophysics, Oxford University, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH, United Kingdom0000-0002-3021-2851PauFiguerasSchool of Mathematical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom0000-0001-6438-315XHalFinkelArgonne National Laboratory (ANL), 9700 S. Cass Avenue, Argonne, IL 60439-4815, United States0000-0002-7551-7122TiagoFran\c{c}aSchool of Mathematical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom0000-0002-1718-151XBo-XuanGeTheoretical Particle Physics and Cosmology, King's College London, Strand, London, WC2R 2LS, United Kingdom0000-0003-0738-3473ChenxiaGuSchool of Mathematical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom0000-0001-9537-6139ThomasHelferHenry A. Rowland Department of Physics & Astronomy, Johns Hopkins University, 3701 San Martin Drive, Baltimore, Maryland (MD) 21218, United States0000-0001-6880-1005JuhaJäykkäDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0002-5929-3931CristianJoanaCosmology, Universe and Relativity at Louvain (CURL), Institut de Recherche en Mathematique et Physique, University of Louvain, 2 Chemin du Cyclotron, 1348 Louvain-la-Neuve, Belgium0000-0003-4642-3028MarkusKuneschDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0003-3818-7897KacperKornetDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0001-8376-8231EugeneA.LimTheoretical Particle Physics and Cosmology, King's College London, Strand, London, WC2R 2LS, United Kingdom0000-0002-6227-9540FrancescoMuiaDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0002-4872-6172ZainabNazariDepartment of Physics, Bogazici University, 34342 Bebek, 80820 Istanbul, Turkey, HECAP Section, Abdus Salam International Centre for Theoretical Physics (ICTP), 34151, Trieste, Italy0000-0002-2955-7262MirenRadiaDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0001-8861-2025JustinRipleyDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0001-7192-0021PaulShellardDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United KingdomUlrichSperhakeDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom, California Institute of Technology, Pasadena, California 91125, USA0000-0002-3134-7088DinaTraykovaAstrophysics, Oxford University, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH, United Kingdom0000-0002-3451-0987SaranTunyasuvunakoolDepartment of Applied Mathematics and Theoretical Physics (DAMTP), University of Cambridge, Centre for Mathematical Sciences, Wilberforce Road, Cambridge CB3 0WA, United Kingdom0000-0002-1620-6797ZipengWangHenry A. Rowland Department of Physics & Astronomy, Johns Hopkins University, 3701 San Martin Drive, Baltimore, Maryland (MD) 21218, United States0000-0002-4745-8209JamesY.WiddicombeTheoretical Particle Physics and Cosmology, King's College London, Strand, London, WC2R 2LS, United Kingdom0000-0003-2269-4544KazeWongHenry A. Rowland Department of Physics & Astronomy, Johns Hopkins University, 3701 San Martin Drive, Baltimore, Maryland (MD) 21218, United States0000-0001-8432-778810.21105/joss.03703https://doi.org/10.5281/zenodo.5771949C++, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.03703.pdfc++, MPI, Open MP, vector intrinsics, gravity, general relativity, numerical relativitytag:joss.theoj.org,2005:Paper/27582021-09-01T13:36:16Z2021-09-02T00:01:23ZOGRe: An Object-Oriented General Relativity Package for Mathematicaacceptedv1.52021-06-13 20:21:50 UTC652021-09-01 13:36:16 UTC620213416BarakShoshanyDepartment of Physics, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada0000-0003-2222-127X10.21105/joss.03416https://doi.org/10.5281/zenodo.5168868Mathematicahttps://joss.theoj.org/papers/10.21105/joss.03416.pdfWolfram Language, Scientific Computing, Differential Geometry, General Relativity, Tensors, Tensor calculustag:joss.theoj.org,2005:Paper/21562021-07-14T20:02:05Z2021-07-15T00:01:47ZfctSnPM: Factorial ANOVA and post-hoc tests for Statistical nonParametric Mapping in MATLABaccepted1.42020-11-12 10:09:02 UTC632021-07-14 20:02:05 UTC620213159RobinTramaUniv. Lyon, UCBL-Lyon 1, Laboratoire Interuniversitaire de Biologie de la Motricité, EA 7424, F 69622, Villeurbanne, France0000-0001-6807-0505ChristopheA.HautierUniv. Lyon, UCBL-Lyon 1, Laboratoire Interuniversitaire de Biologie de la Motricité, EA 7424, F 69622, Villeurbanne, FranceYoannBlacheUniv. Lyon, UCBL-Lyon 1, Laboratoire Interuniversitaire de Biologie de la Motricité, EA 7424, F 69622, Villeurbanne, France0000-0001-5960-891610.21105/joss.03159https://doi.org/10.5281/zenodo.5101107Matlab, Objective-C, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.03159.pdfMATLAB, statistical analysis, Statistical Parametric Mapping, Statistical nonParametric Mappingtag:joss.theoj.org,2005:Paper/24342021-06-08T14:39:38Z2021-06-09T00:01:16ZFitBenchmarking: an open source Python package comparing data fitting softwareacceptedv 0.1.02021-03-01 09:50:30 UTC622021-06-08 14:39:38 UTC620213127AndersMarkvardsenScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXTyroneReesScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXMichaelWathenScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXAndrewListerScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXPatrickOdagiuScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXAtijitAnuchitanukulScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXTomFarmerScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXAnthonyLimScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXFedericoMontesinoScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QXTimSnowDiamond Light Source Ltd, Diamond House, Harwell Campus, Didcot, Oxfordshire, OX11 0DEAndrewMcCluskeyDiamond Light Source Ltd, Diamond House, Harwell Campus, Didcot, Oxfordshire, OX11 0DE10.21105/joss.03127https://doi.org/10.5281/zenodo.4892752Python, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.03127.pdffitting, non-linear least squarestag:joss.theoj.org,2005:Paper/18682020-10-30T19:17:32Z2021-02-15T11:30:15ZRK-Opt: A package for the design of numerical ODE solversacceptedv1.0.02020-07-21 06:05:44 UTC542020-10-30 19:17:32 UTC520202514DavidI.KetchesonKing Abdullah University of Science and Technology, Saudi Arabia0000-0002-1212-126XMatteoParsaniKing Abdullah University of Science and Technology, Saudi Arabia0000-0001-7300-1280ZacharyJ.GrantOak Ridge National Laboratory, USA0000-0002-1293-4770AronJ.AhmadiaCapital One, USA0000-0002-2573-2481HendrikRanochaKing Abdullah University of Science and Technology, Saudi Arabia0000-0002-3456-227710.21105/joss.02514https://doi.org/10.5281/zenodo.4146740Matlab, Mathematica, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02514.pdfnumerical analysis, differential equations, Runge-Kutta method, linear multistep method, strong stability preservation, absolute stabilitytag:joss.theoj.org,2005:Paper/14092020-09-22T17:03:44Z2021-02-15T11:31:14ZOceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUsacceptedv0.18.02019-12-17 16:37:26 UTC532020-09-22 17:03:44 UTC520202018AliRamadhanMassachusetts Institute of Technology0000-0003-1102-1520GregoryLeClaireWagnerMassachusetts Institute of Technology0000-0001-5317-2445ChrisHillMassachusetts Institute of TechnologyJean-MichelCampinMassachusetts Institute of TechnologyValentinChuravyMassachusetts Institute of TechnologyTimBesardJulia Computing, Inc.AndreSouzaMassachusetts Institute of TechnologyAlanEdelmanMassachusetts Institute of TechnologyRaffaeleFerrariMassachusetts Institute of TechnologyJohnMarshallMassachusetts Institute of Technology10.21105/joss.02018https://doi.org/10.5281/zenodo.4019272Julia, Mathematica, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02018.pdffluid, ocean, climate, gpu