tag:joss.theoj.org,2005:/papers/in/MATLABJournal of Open Source Software2024-03-12T19:13:10ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/46892024-03-12T19:13:10Z2024-03-13T00:00:51ZTide Model Driver for MATLABaccepted3.0.02023-08-09 22:26:21 UTC952024-03-12 19:13:10 UTC920246018ChadA.GreeneInstitute for Geophysics, John A. and Katherine G. Jackson School of Geosciences, University of Texas at Austin, Austin, TX, USA0000-0001-6710-6297SvetlanaErofeevaCollege of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, USA0000-0002-4489-7505LauriePadmanEarth and Space Research, Corvallis, OR, USA0000-0003-2010-642XSusanL.HowardEarth and Space Research, Corvallis, OR, USA0000-0002-9183-0178TylerSutterleyUniversity of Washington Applied Physics Laboratory Polar Science Center, Seattle, WA, 98122, USA0000-0002-6964-1194GaryEgbertCollege of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, USA10.21105/joss.06018https://doi.org/10.5281/zenodo.10724881MATLABhttps://joss.theoj.org/papers/10.21105/joss.06018.pdftides, oceanography, TMDtag:joss.theoj.org,2005:Paper/43002024-02-21T08:51:15Z2024-02-23T09:04:14ZReducing the efforts to create reproducible analysis code with FieldTripacceptedhttps://github.com/fieldtrip/fieldtrip/commit/9cfc0a7e7b7871a1d9938552ce60041c59f3a5532023-03-10 17:12:47 UTC942024-02-21 08:51:15 UTC920245566MatsW.j.van EsDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, United Kingdom, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom0000-0002-7133-509XEelkeSpaakDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0002-2018-3364Jan-MathijsSchoffelenDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0003-0923-6610RobertOostenveldDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, NatMEG, Karolinska Institutet, Stockholm, Sweden0000-0002-1974-129310.21105/joss.05566https://doi.org/10.5281/zenodo.10495308MATLAB, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.05566.pdfFieldTrip Toolbox, reproducibility, analysis pipeline, open science, MEG, EEGtag:joss.theoj.org,2005:Paper/47122024-01-03T15:30:53Z2024-01-04T00:00:32ZGibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rustaccepted0.1.22023-08-21 04:54:16 UTC932024-01-03 15:30:53 UTC920245988GuilhermeP.CastelaoScripps Institution of Oceanography0000-0002-6765-0708LuizIrberUC Davis0000-0003-4371-965910.21105/joss.05988https://doi.org/10.5281/zenodo.10422483C, Rust, MATLAB, Nixhttps://joss.theoj.org/papers/10.21105/joss.05988.pdfoceanographytag:joss.theoj.org,2005:Paper/49122023-12-18T16:42:37Z2023-12-19T00:00:28ZlibEnsemble: A complete Python toolkit for dynamic ensembles of calculationsacceptedv1.0.02023-11-01 13:13:50 UTC922023-12-18 16:42:37 UTC820236031StephenHudsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-7500-6138JeffreyLarsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0001-9924-2082John-LukeNavarroMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-9916-9038StefanM.WildAMCR Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, Industrial Engineering and Management Sciences, Northwestern University, Evanston, IL, USA0000-0002-6099-277210.21105/joss.06031https://doi.org/10.5281/zenodo.10391387Python, MATLAB, Perl, Chttps://joss.theoj.org/papers/10.21105/joss.06031.pdfensemble workflows, optimization and learningtag:joss.theoj.org,2005:Paper/38572023-11-20T17:37:21Z2023-11-25T01:16:15ZSoftware Design and User Interface of ESPnet-SE++: Speech Enhancement for Robust Speech Processingacceptedv.2022072022-09-07 13:11:51 UTC912023-11-20 17:37:21 UTC820235403Yen-JuLuJohns Hopkins University, USA0000-0001-8400-4188XuankaiChangCarnegie Mellon University, USA0000-0002-5221-5412ChendaLiShanghai Jiao Tong University, Shanghai0000-0003-0299-9914WangyouZhangShanghai Jiao Tong University, Shanghai0000-0003-4500-3515SamueleCornellCarnegie Mellon University, USA, Universita\` Politecnica delle Marche, Italy0000-0002-5358-1844ZhaohengNiMeta AI, USAYoshikiMasuyamaCarnegie Mellon University, USA, Tokyo Metropolitan University, JapanBrianYanCarnegie Mellon University, USARobinScheiblerLINE Corporation, Japan0000-0002-5205-8365Zhong-QiuWangCarnegie Mellon University, USA0000-0002-4204-9430YuTsaoAcademia Sinica, Taipei0000-0001-6956-0418YanminQianShanghai Jiao Tong University, Shanghai0000-0002-0314-3790ShinjiWatanabeCarnegie Mellon University, USA0000-0002-5970-863110.21105/joss.05403https://doi.org/10.5281/zenodo.10048174Python, Perl, MATLABhttps://joss.theoj.org/papers/10.21105/joss.05403.pdfESPnet, speech processing, speech enhancementtag:joss.theoj.org,2005:Paper/37392023-11-16T17:02:35Z2023-11-17T06:18:04ZMotorcycle: A spectral boundary-integral method for seismic cycles on multiple faultsacceptedv1.0.02022-07-22 15:52:11 UTC912023-11-16 17:02:35 UTC820235097SylvainBarbotUniversity of Southern California0000-0003-4257-740910.21105/joss.05097https://doi.org/10.5281/zenodo.10129331Fortran, MATLABhttps://joss.theoj.org/papers/10.21105/joss.05097.pdffault dynamics, friction, geophysics, Fortran90tag:joss.theoj.org,2005:Paper/44552023-10-24T16:13:59Z2023-10-25T00:00:56Zbaseflow: a MATLAB and GNU Octave package for baseflow recession analysisacceptedv0.1.02023-04-27 18:48:04 UTC902023-10-24 16:13:59 UTC820235492MatthewG.CooperAtmospheric, Climate, and Earth Sciences, Pacific Northwest National Laboratory, Richland, WA, USA0000-0002-0165-209XTianZhouAtmospheric, Climate, and Earth Sciences, Pacific Northwest National Laboratory, Richland, WA, USA0000-0003-1582-400510.21105/joss.05492https://doi.org/10.5281/zenodo.8401301MATLAB, PHPhttps://joss.theoj.org/papers/10.21105/joss.05492.pdfMatlab, Octave, hydrology, groundwater, baseflow, streamflow, aquifer, Pareto distribution, power law, plfittag:joss.theoj.org,2005:Paper/40302023-10-02T07:49:41Z2023-10-04T15:51:32ZSMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)acceptedv0.2.02022-11-28 23:42:12 UTC902023-10-02 07:49:41 UTC820235563DavidJ.SchodtDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-8986-2736MichaelJ.WesterDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America, Department of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of America0000-0002-3520-7605MohamadrezaFazelDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6215-1336SajjadKhanDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6910-5199HaniehMazloom-FarsibafDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-2571-0418SandeepPallikkuthDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0009-0003-0400-6389MarjoleinB. m.MeddensDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9965-1342FarzinFarzamDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9939-1923EricA.BurnsDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-1625-2400WilliamK.KanagyDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5756-9965DerekA.RinaldiDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0009-0000-8394-3626EltonJhambaDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5272-6466ShengLiuDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0003-1225-0763PeterK.RelichDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6063-6233MarkJ.OlahDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of AmericaStanlyL.SteinbergDepartment of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of AmericaKeithA.LidkeDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9328-431810.21105/joss.05563https://doi.org/10.5281/zenodo.8327409MATLAB, Cuda, C++, Chttps://joss.theoj.org/papers/10.21105/joss.05563.pdfsingle molecule localization microscopy (SMLM), single particle tracking (SPT), super resolutiontag:joss.theoj.org,2005:Paper/40162023-08-07T16:27:48Z2023-08-08T00:01:14ZSubZero: a discrete element sea ice model that simulates floes as evolving concave polygonsacceptedv1.0.22022-11-19 21:21:08 UTC882023-08-07 16:27:48 UTC820235039BrandonP.MontemuroSchool of Oceanography, University of Washington, Seattle, WA, USA0000-0003-1946-4916GeorgyE.ManucharyanSchool of Oceanography, University of Washington, Seattle, WA, USA0000-0001-7959-267510.21105/joss.05039https://doi.org/10.5281/zenodo.8205778MATLAB, C++, C#https://joss.theoj.org/papers/10.21105/joss.05039.pdfSea Ice Modeling, Collisions, Fractures, Deformation, Discrete Element Methods, Deformable Polygonal Elements, Floe Size Distribution, Ice Thickness Distributiontag:joss.theoj.org,2005:Paper/37172023-06-27T21:40:04Z2023-06-28T00:01:43ZGORILLA: Guiding-center ORbit Integration with Local Linearization Approachacceptedv1.12022-07-13 10:32:58 UTC862023-06-27 21:40:04 UTC820234890MichaelEderInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0002-1392-1664LukasM. p.BauerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0003-3341-4085DanielForstenlechnerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaGeorgS.GraßlerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaSergeiV.KasilovInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria, Institute of Plasma Physics, National Science Center, “Kharkov Institute of Physics and Technology,” Akademicheskaya str. 1, 61108 Kharkov, Ukraine, Department of Applied Physics and Plasma Physics, V. N. Karazin Kharkov National University, Svobody sq. 4, 61022 Kharkov, UkraineWinfriedKernbichlerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaMarkusMeisterhoferInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaMichaelScheidtInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaChristopherG.AlbertInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0003-4773-416X10.21105/joss.04890https://doi.org/10.5281/zenodo.8059175MATLAB, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04890.pdfFortran, Theoretical physics, Computational physics, Plasma physics, Plasma dynamics, Numerical integration, Hamiltonian mechanics, Kinetic theory, Magnetic confinement fusion, Fusion reactors, Tokamaks, Stellarators