tag:joss.theoj.org,2005:/papers/in/FortranJournal of Open Source Software2024-02-29T19:05:35ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/41602024-02-29T19:05:35Z2024-03-01T08:13:27ZDAPPER: Data Assimilation with Python: a Package for Experimental Researchacceptedv1.4.02023-01-10 18:54:31 UTC942024-02-29 19:05:35 UTC920245150PatrickN.RaanesNORCE, Bergen, Norway, NERSC, Bergen, Norway0000-0001-5073-6786YumengChenDepartment of Meteorology and NCEO, University of Reading, Reading, UK0000-0002-2319-6937ColinGrudzienCW3E - Scripps Institution of Oceanography, University of California, San Diego, USA, Department of Mathematics and Statistics, University of Nevada, Reno, USA0000-0002-3084-317810.21105/joss.05150https://doi.org/10.5281/zenodo.10710355Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.05150.pdfdata-assimilation, state-estimation, bayesian-filter, kalman-filtering, enkf, particle-filter, chaos, bayesian-methodstag:joss.theoj.org,2005:Paper/47412024-02-22T20:44:13Z2024-02-23T00:01:06ZStokesian Dynamics in Pythonaccepted2.1.02023-09-06 17:57:11 UTC942024-02-22 20:44:13 UTC920246011AdamK.TownsendDepartment of Mathematical Sciences, Durham University, Upper Mountjoy, Stockton Road, Durham DH1 3LE, United Kingdom0000-0003-1700-287310.21105/joss.06011https://doi.org/10.5281/zenodo.10685546Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.06011.pdfStokesian Dynamics, low Reynolds number flow, suspension mechanics, fluid dynamics, non-Newtonian fluidstag:joss.theoj.org,2005:Paper/49082024-02-14T15:41:34Z2024-02-15T00:01:24ZThe MOOSE Thermal Hydraulics Moduleacceptedv1.0.02023-10-30 21:51:40 UTC942024-02-14 15:41:34 UTC920246146JoshuaHanselIdaho National Laboratory0000-0001-6782-5275DavidAndrsIdaho National Laboratory0000-0002-8913-902XLiseCharlotIdaho National Laboratory0000-0002-6343-6990GuillaumeGiudicelliIdaho National Laboratory0000-0001-9714-438210.21105/joss.06146https://doi.org/10.5281/zenodo.10651363Python, C, Fortranhttps://joss.theoj.org/papers/10.21105/joss.06146.pdfC++, multiphysics, system analysis, thermal hydraulicstag:joss.theoj.org,2005:Paper/47172024-02-07T21:21:42Z2024-02-14T14:53:20ZCLEAVING: a LAMMPS package to compute surface free energiesacceptedv1.0.02023-08-24 09:40:12 UTC942024-02-07 21:21:42 UTC920245886NicodemoDi PasqualeDepartment of Chemical Engineering, Brunel University London, United Kingdom, (Current affiliation) Department of Industrial Chemistry, University of Bologna, Italy0000-0001-5676-8527RuslanDavidchackDepartment of Mathematics, University of Leicester, United Kingdom0000-0001-9418-5322LorenzoRovigattiDepartment of Physics, Sapienza University of Rome, Italy, CNR-ISC UoS Sapienza, Rome, Italy0000-0001-5017-282910.21105/joss.05886https://doi.org/10.5281/zenodo.10567702C++, Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.05886.pdfLAMMPS, Molecular simulations, Phase Transitionstag:joss.theoj.org,2005:Paper/48992024-02-01T01:26:49Z2024-02-02T00:00:54ZTDEP: Temperature Dependent Effective Potentialsacceptedv1.02023-10-25 16:51:46 UTC942024-02-01 01:26:49 UTC920246150FlorianKnoopTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0002-7132-039XNinaShulumbaTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0002-2374-7487AloïsCastellanoNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium0000-0002-8783-490XJ.P. AlvarinhasBatistaNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium0000-0002-3314-249XRobertaFarrisCatalan Institute of Nanoscience and Nanotechnology - ICN2 (BIST and CSIC), Campus UAB, 08193 Bellaterra (Barcelona), Spain0000-0001-6710-0100MatthieuJ.VerstraeteNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium, ITP, Physics Department, University of Utrecht, 3584 CC Utrecht, the Netherlands0000-0001-6921-5163MatthewHeineDepartment of Physics, Boston College, Chestnut Hill, MA 02467, USA0000-0002-4882-6712DavidBroidoDepartment of Physics, Boston College, Chestnut Hill, MA 02467, USA0000-0003-0182-4450DennisS.KimCollege of Letters and Science, Department of Chemistry and Biochemistry, University of California, Los Angeles (UCLA), California 90025, USA0000-0002-5707-2609JohanKlarbringTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden, Department of Materials, Imperial College London, South Kensington Campus, London SW7 2AZ, UK0000-0002-6223-5812IgorA.AbrikosovTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0001-7551-4717SergeiI.SimakTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden, Department of Physics and Astronomy, Uppsala University, SE-75120 Uppsala, Sweden0000-0002-1320-389XOlleHellmanWeizmann Institute of Science, Rehovot, Israel0000-0002-3453-297510.21105/joss.06150https://doi.org/10.5281/zenodo.10589895Fortran, C++https://joss.theoj.org/papers/10.21105/joss.06150.pdfPhysics, Phonons, Temperature, Anharmonicity, Thermal transport, Neutron spectroscopy, Raman spectroscopytag:joss.theoj.org,2005:Paper/46862024-01-22T16:32:03Z2024-01-23T00:01:01ZThe Kestrel software for simulations of morphodynamic Earth-surface flowsaccepted1.02023-08-09 17:30:12 UTC932024-01-22 16:32:03 UTC920246079JakeLanghamSchool of Mathematics, Fry Building, University of Bristol, Bristol, BS8 1UG, UK0000-0001-9857-7016MarkJ.WoodhouseSchool of Earth Sciences, Wills Memorial Building, University of Bristol, Bristol, BS8 1RJ, UK0000-0002-2198-679110.21105/joss.06079https://doi.org/10.5281/zenodo.10477693M4, Fortran, C++https://joss.theoj.org/papers/10.21105/joss.06079.pdfgeophysics, shallow water, debris flow, morphodynamicstag:joss.theoj.org,2005:Paper/47252023-11-21T16:42:45Z2023-11-22T00:01:01ZThe 2DECOMP&FFT library: an update with new CPU/GPU capabilitiesacceptedV2.0.02023-08-30 13:10:08 UTC912023-11-21 16:42:45 UTC820235813StefanoRolfoSTFC Daresbury Laboratory, Scientific Computing Department, UKRI, UK0000-0001-6325-7629CédricFlageulPPRIME institute, Curiosity Group, Université de Poitiers, CNRS, ISAE-ENSMA, Poitiers, FrancePaulBartholomewEPCC, The University of Edinburgh, Edinburgh, UKFilippoSpigaNVIDIA Corporation, Cambridge, UKSylvainLaizetDepartment of Aeronautics, Imperial College London, London, UK10.21105/joss.05813https://doi.org/10.5281/zenodo.10160599Fortran, C++https://joss.theoj.org/papers/10.21105/joss.05813.pdfFFT, Finite Difference Discretisation, Pencil Decompositiontag:joss.theoj.org,2005:Paper/37392023-11-16T17:02:35Z2023-11-17T06:18:04ZMotorcycle: A spectral boundary-integral method for seismic cycles on multiple faultsacceptedv1.0.02022-07-22 15:52:11 UTC912023-11-16 17:02:35 UTC820235097SylvainBarbotUniversity of Southern California0000-0003-4257-740910.21105/joss.05097https://doi.org/10.5281/zenodo.10129331Fortran, MATLABhttps://joss.theoj.org/papers/10.21105/joss.05097.pdffault dynamics, friction, geophysics, Fortran90tag:joss.theoj.org,2005:Paper/42782023-10-10T17:00:25Z2023-10-11T00:01:01ZSwiftest: An \textit{N}-body Integrator for Gravitational Systemsacceptedv1.0.02023-03-04 17:59:58 UTC902023-10-10 17:00:25 UTC820235409CarlisleWishardDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, Evansville Museum of Arts, History & Science, USA0009-0001-0733-3268JenniferPouplinDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, Department of Physics and Astronomy, Purdue University, USAJacobElliottDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USADanaSinghSAIC, Princeton, NJ, USAKaustubAnandDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, School of Aeronautics and Astronautics, Purdue University, USADavidMintonDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA0000-0003-1656-970410.21105/joss.05409https://doi.org/10.5281/zenodo.8417148Fortran, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05409.pdfAstronomy, Dynamics, N-body, Planetary Systemstag:joss.theoj.org,2005:Paper/45052023-10-03T18:19:25Z2023-10-09T03:20:41ZTime-frequency component of the GreenX library: minimax grids for efficient RPA and GW calculationsacceptedV1.0.02023-05-24 09:13:15 UTC902023-10-03 18:19:25 UTC820235570MaryamAziziInstitute of Condensed Matter and Nanoscience, UCLouvain, B-1348 Louvain-la-Neuve, Belgium0000-0001-9089-1043JanWilhelmInstitute of Theoretical Physics and Regensburg Center for Ultrafast Nanoscopy (RUN), University of Regensburg, D-93053 Regensburg, Germany0000-0001-8678-8246DorotheaGolzeFaculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062 Dresden, Germany0000-0002-2196-9350MatteoGiantomassiInstitute of Condensed Matter and Nanoscience, UCLouvain, B-1348 Louvain-la-Neuve, Belgium0000-0002-7007-9813RamónL.Panadés-BarruetaFaculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062 Dresden, Germany0000-0003-4239-0978FranciscoA.DelesmaDepartment of Applied Physics, Aalto University, P.O. Box 11100, 00076 Aalto, Finland0000-0001-6912-7745AlexanderBuccheriInstitut für Physik und Iris Adlershof, Humboldt-Universität zu Berlin, Zum Großen Windkanal 2, 12489 Berlin, Germany0000-0001-5983-8631AndrisGulansDepartment of Physics, University of Latvia, Jelgavas iela 3, Riga, LV-1004 Latvia0000-0001-7304-1952PatrickRinkeDepartment of Applied Physics, Aalto University, P.O. Box 11100, 00076 Aalto, Finland0000-0003-1898-723XClaudiaDraxlInstitut für Physik und Iris Adlershof, Humboldt-Universität zu Berlin, Zum Großen Windkanal 2, 12489 Berlin, Germany0000-0003-3523-6657XavierGonzeInstitute of Condensed Matter and Nanoscience, UCLouvain, B-1348 Louvain-la-Neuve, Belgium0000-0002-8377-682910.21105/joss.05570https://doi.org/10.5281/zenodo.8321618Fortran, Python, Chttps://joss.theoj.org/papers/10.21105/joss.05570.pdfFORTRAN, Low scaling GW calculations, Low scaling RPA calculations, Minimax approximation