tag:joss.theoj.org,2005:/papers/in/CudaJournal of Open Source Software2024-01-19T09:43:47ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/45442024-01-19T09:43:47Z2024-01-21T09:05:49ZPATATO: a Python photoacoustic tomography analysis toolkitacceptedv0.5.02023-06-14 09:14:00 UTC932024-01-19 09:43:47 UTC920245686ThomasR.ElseCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-2652-4190JanekGröhlCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-5332-4856LinaHackerCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom, Department of Oncology, University of Oxford, United Kingdom0000-0001-5160-0952SarahE.BohndiekCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0003-0371-863510.21105/joss.05686https://doi.org/10.5281/zenodo.10255220Python, C++, Cuda, Chttps://joss.theoj.org/papers/10.21105/joss.05686.pdfPhotoacoustics, Imaging, Optoacoustics, MSOT, Reconstruction, Backprojection, Unmixingtag:joss.theoj.org,2005:Paper/40302023-10-02T07:49:41Z2023-10-04T15:51:32ZSMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)acceptedv0.2.02022-11-28 23:42:12 UTC902023-10-02 07:49:41 UTC820235563DavidJ.SchodtDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-8986-2736MichaelJ.WesterDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America, Department of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of America0000-0002-3520-7605MohamadrezaFazelDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6215-1336SajjadKhanDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6910-5199HaniehMazloom-FarsibafDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-2571-0418SandeepPallikkuthDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0009-0003-0400-6389MarjoleinB. m.MeddensDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9965-1342FarzinFarzamDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9939-1923EricA.BurnsDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-1625-2400WilliamK.KanagyDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5756-9965DerekA.RinaldiDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0009-0000-8394-3626EltonJhambaDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5272-6466ShengLiuDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0003-1225-0763PeterK.RelichDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6063-6233MarkJ.OlahDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of AmericaStanlyL.SteinbergDepartment of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of AmericaKeithA.LidkeDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9328-431810.21105/joss.05563https://doi.org/10.5281/zenodo.8327409MATLAB, Cuda, C++, Chttps://joss.theoj.org/papers/10.21105/joss.05563.pdfsingle molecule localization microscopy (SMLM), single particle tracking (SPT), super resolutiontag:joss.theoj.org,2005:Paper/44862023-08-12T20:00:20Z2023-08-13T00:01:13ZPyPO: a Python package for Physical Opticsacceptedv1.0.02023-05-16 21:39:31 UTC882023-08-12 20:00:20 UTC820235478ArendMoermanFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0002-0475-6134MaikelH.GafajiThe Hague University of Applied Sciences, Johanna Westerdijkplein 75, 2521 EN, The Hague, The NetherlandsKenichiKaratsuFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands, SRON—Netherlands Institute for Space Research, Niels Bohrweg 4, 2333 CA, Leiden, The Netherlands0000-0003-4562-5584AkiraEndoFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0003-0379-234110.21105/joss.05478https://doi.org/10.5281/zenodo.8241427Python, C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.05478.pdfPhysical Optics, Geometrical Optics, Reflectors, CUDAtag:joss.theoj.org,2005:Paper/36842022-11-23T18:51:00Z2022-11-24T00:01:12ZFastGeodis: Fast Generalised Geodesic Distance Transformacceptedv1.0.0rc42022-06-27 21:31:17 UTC792022-11-23 18:51:00 UTC720224532MuhammadAsadSchool of Biomedical Engineering & Imaging Sciences, King’s College London, UK0000-0002-3672-2414ReubenDorentSchool of Biomedical Engineering & Imaging Sciences, King’s College London, UK0000-0002-7530-0644TomVercauterenSchool of Biomedical Engineering & Imaging Sciences, King’s College London, UK0000-0003-1794-045610.21105/joss.04532https://doi.org/10.5281/zenodo.7349069Python, C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.04532.pdfPyTorch, Deep Learning, Medical Imaging, Distance Transformtag:joss.theoj.org,2005:Paper/36872022-08-03T13:26:59Z2023-08-21T09:34:38ZAccelerating Parallel Operation for Compacting Selected Elements on GPUsaccepted1.02022-06-28 19:04:46 UTC752022-08-03 13:26:59 UTC720224589JohannesFettTU Dresden, Germany0000-0001-7898-0502UrsKoberTU Dresden, GermanyChristianSchwarzTU Dresden, GermanyDirkHabichTU Dresden, GermanyWolfgangLehnerTU Dresden, Germany10.21105/joss.04589https://doi.org/10.5281/zenodo.6884000Python, Cudahttps://joss.theoj.org/papers/10.21105/joss.04589.pdfCompacting, GPU, Optimization, Parallel, Euro-Partag:joss.theoj.org,2005:Paper/19082022-02-14T13:53:07Z2022-02-15T00:01:06ZgLBM: A GPU enabled Lattice Boltzmann Method Libraryacceptedv1.0.02020-07-24 12:52:58 UTC702022-02-14 13:53:07 UTC720222555AaronBrayKitware, Inc., Carrboro, NC 275100000-0002-2188-7646RachelB.ClippKitware, Inc., Carrboro, NC 275100000-0001-6077-978XM.UmarQureshiKitware, Inc., Carrboro, NC 27510SorinMitranDepartment of Mathematics, University of North Carolina, Chapel Hill, NC 27599-32500000-0003-4518-0116AndinetEnquobahrieKitware, Inc., Carrboro, NC 2751010.21105/joss.02555https://doi.org/10.5281/zenodo.6076998C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.02555.pdfGPU, Lattice Boltzmann Method, Computational Fluid Dynamicstag:joss.theoj.org,2005:Paper/28452021-10-23T14:46:00Z2021-10-24T00:02:56ZA Fast Iterative Method Python packageacceptedv1.02021-07-13 13:49:05 UTC662021-10-23 14:46:00 UTC620213641ThomasGranditsInstitute of Computer Graphics and Vision, TU Graz10.21105/joss.03641https://doi.org/10.5281/zenodo.5594452Python, Cudahttps://joss.theoj.org/papers/10.21105/joss.03641.pdfeikonal, partial differential equations, cudatag:joss.theoj.org,2005:Paper/22932021-07-09T17:42:32Z2021-07-10T00:02:42ZlibCEED: Fast algebra for high-order element-based discretizationsacceptedv0.8.02021-01-04 07:15:15 UTC632021-07-09 17:42:32 UTC620212945JedBrownUniversity of Colorado at Boulder0000-0002-9945-0639AhmadAbdelfattahUniversity of Tennessee0000-0001-5054-4784ValeriaBarraUniversity of Colorado at Boulder0000-0003-1129-2056NatalieBeamsUniversity of Tennessee0000-0001-6060-4082Jean-SylvainCamierLawrence Livermore National Laboratory0000-0003-2421-1999VeselinDobrevLawrence Livermore National Laboratory0000-0003-1793-5622YohannDudouitLawrence Livermore National Laboratory0000-0001-5831-561XLeilaGhaffariUniversity of Colorado at Boulder0000-0002-0965-214XTzanioKolevLawrence Livermore National Laboratory0000-0002-2810-3090DavidMedinaOccalytics LLCWillPaznerLawrence Livermore National Laboratory0000-0003-4885-2934ThilinaRatnayakaUniversity of Illinois at Urbana-Champaign0000-0001-6102-6560JeremyThompsonUniversity of Colorado at Boulder0000-0003-2980-0899StanTomovUniversity of Tennessee0000-0002-5937-795910.21105/joss.02945https://doi.org/10.5281/zenodo.5080235C, C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.02945.pdfhigh-performance computing, high-order methods, finite elements, spectral elements, matrix-freetag:joss.theoj.org,2005:Paper/23572021-04-06T20:13:52Z2021-04-07T00:01:20ZPyFstat: a Python package for continuous gravitational-wave data analysisacceptedv1.11.12021-01-26 15:03:17 UTC602021-04-06 20:13:52 UTC620213000DavidKeitelDepartament de Física, Institut d'Aplicacions Computacionals i de Codi Comunitari (IAC3), Universitat de les Illes Balears, and Institut d'Estudis Espacials de Catalunya (IEEC), Crta. Valldemossa km 7.5, E-07122 Palma, Spain0000-0002-2824-626XRodrigoTenorioDepartament de Física, Institut d'Aplicacions Computacionals i de Codi Comunitari (IAC3), Universitat de les Illes Balears, and Institut d'Estudis Espacials de Catalunya (IEEC), Crta. Valldemossa km 7.5, E-07122 Palma, Spain0000-0002-3582-2587GregoryAshtonOzGrav, School of Physics & Astronomy, Monash University, Clayton 3800, Victoria, Australia0000-0001-7288-2231ReinhardPrixMax-Planck-Institut für Gravitationsphysik (Albert-Einstein-Institut), D-30167 Hannover, Germany, Leibniz Universität Hannover, D-30167 Hannover, Germany0000-0002-3789-642410.21105/joss.03000https://doi.org/10.5281/zenodo.4660591Python, Cudahttps://joss.theoj.org/papers/10.21105/joss.03000.pdfgravitational waves, continuous waves, pulsars, data analysistag:joss.theoj.org,2005:Paper/16752020-10-29T06:57:08Z2021-02-15T11:30:41ZOpen Source Optical Coherence Tomography Softwareacceptedv1.0.02020-05-22 18:22:03 UTC542020-10-29 06:57:08 UTC520202580MiroslavZabicInstitute of Quantum Optics, Leibniz University Hannover, Welfengarten 1, 30167 Hannover, Germany, Industrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, Germany0000-0002-4494-6127BenMatthiasIndustrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, GermanyAlexanderHeisterkampInstitute of Quantum Optics, Leibniz University Hannover, Welfengarten 1, 30167 Hannover, GermanyTammoRipkenIndustrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, Germany10.21105/joss.02580https://doi.org/10.5281/zenodo.4148992QMake, GLSL, C++, Cuda, Chttps://joss.theoj.org/papers/10.21105/joss.02580.pdfCUDA, Optical Coherence Tomography