tag:joss.theoj.org,2005:/papers/in/CJournal of Open Source Software2024-03-27T23:48:03ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/51402024-03-27T23:48:03Z2024-03-28T00:11:53ZTDApplied: An R package for machine learning and inference with persistence diagramsacceptedv3.0.22024-01-25 19:46:31 UTC952024-03-27 23:48:03 UTC920246321ShaelBrownDepartment of Quantitative Life Sciences, McGill University, Montreal, Canada0000-0001-8868-2867RezaFarivar-MohseniMcGill Vision Research, Department of Opthamology, McGill University, Montreal, Canada0000-0002-3123-262710.21105/joss.06321https://doi.org/10.5281/zenodo.10814141R, C++, Chttps://joss.theoj.org/papers/10.21105/joss.06321.pdftopological data analysis, persistent homologytag:joss.theoj.org,2005:Paper/46292024-03-16T22:48:59Z2024-03-17T00:00:58ZFeenoX: a cloud-first finite-element(ish) computational engineering toolacceptedv0.32023-07-27 16:01:35 UTC952024-03-16 22:48:59 UTC920245846JeremyThelerSeamplex, Argentina, Instituto Balseiro, Argentina0000-0002-4142-498010.21105/joss.05846https://doi.org/10.5281/zenodo.10819606M4, C, GLSLhttps://joss.theoj.org/papers/10.21105/joss.05846.pdfengineering, partial differential equations, differential algebraic equationstag:joss.theoj.org,2005:Paper/42702024-02-22T16:46:16Z2024-02-23T00:01:10ZAkantu: an HPC finite-element library for contact and dynamic fracture simulationsacceptedv4.0.12023-02-28 19:10:56 UTC942024-02-22 16:46:16 UTC920245253NicolasRichartCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1463-4405GuillaumeAnciauxCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-9624-5621EmilGallyamovCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-2970-0890LucasFrérotCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Microsystems Engineering, University of Freiburg, Germany, Institut Jean le Rond d'Alembert, CNRS UMR 7190, Sorbonne Université, France0000-0002-4138-1052DavidKammerCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0003-3782-9368MohitPundirCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0001-7244-7416MarcoVocialtaCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandAureliaCubaRamosCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandMauroCorradoCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Structural, Geotechnical and Building Engineering, Politecnico di Torino, ItalyPhilipMüllerInstitute for Building Materials, ETH Zurich, SwitzerlandFabianBarrasCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Njord Centre Department of Physics, Department of Geosciences, University of Oslo, Norway0000-0003-1109-0200ShenghanZhangCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Hong Kong University of Science and Technology, Department of Civil and Environmental Engineering0000-0002-4327-9115RoxaneFerryCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-1881-6596ShadDurusselCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0009-0001-6036-168XJean-FrançoisMolinariCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1728-184410.21105/joss.05253https://doi.org/10.5281/zenodo.10668768C, C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05253.pdfcohesive element, contact, fracture, pythontag:joss.theoj.org,2005:Paper/49082024-02-14T15:41:34Z2024-02-15T00:01:24ZThe MOOSE Thermal Hydraulics Moduleacceptedv1.0.02023-10-30 21:51:40 UTC942024-02-14 15:41:34 UTC920246146JoshuaHanselIdaho National Laboratory0000-0001-6782-5275DavidAndrsIdaho National Laboratory0000-0002-8913-902XLiseCharlotIdaho National Laboratory0000-0002-6343-6990GuillaumeGiudicelliIdaho National Laboratory0000-0001-9714-438210.21105/joss.06146https://doi.org/10.5281/zenodo.10651363Python, C, Fortranhttps://joss.theoj.org/papers/10.21105/joss.06146.pdfC++, multiphysics, system analysis, thermal hydraulicstag:joss.theoj.org,2005:Paper/45912024-01-28T18:34:03Z2024-01-29T08:05:01Zmatscipy: materials science at the atomic scale with Pythonaccepted0.8.02023-07-10 11:58:56 UTC932024-01-28 18:34:03 UTC920245668PetrGrigorevAix-Marseille Université, CNRS, CINaM UMR 7325, Campus de Luminy, 13288 Marseille, France0000-0002-6409-9092LucasFrérotDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-4138-1052FraserBirksWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0009-0008-9117-0393AdrienGolaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Institute for Applied Materials, Karlsruhe Institute of Technology, Engelbert-Arnold-Straße 4, 76131 Karlsruhe, Germany0000-0002-5102-1931JacekGolebiowskiDepartment of Materials, Imperial College London, London SW7 2AZ, United Kingdom0000-0001-8053-8318JanGrießerDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-2149-6730JohannesL.HörmannDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-5867-695XAndreasKlemenzFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-5677-5639GianpietroMorasFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0002-4623-2881WolframG.NöhringDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-4203-755XJonasA.OldenstaedtDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-7475-3019PunitPatelWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United KingdomThomasReichenbachFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-7477-6248ThomasRockeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0002-4612-9112LakshmiShenoyWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-5760-3345MichaelWalterCluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-6679-2491SimonWengertFritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany0000-0002-8008-1482LeiZhangEngineering and Technology Institute Groningen, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands0000-0003-4414-7111JamesR.KermodeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-6755-6271LarsPastewkaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-8351-733610.21105/joss.05668https://doi.org/10.5281/zenodo.10564956C++, C, Meson, Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05668.pdfMaterial Science, Atomistic simulationstag:joss.theoj.org,2005:Paper/40952024-01-23T15:58:31Z2024-01-24T00:01:23ZA C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulatorsaccepted1.0.02022-12-20 10:19:22 UTC932024-01-23 15:58:31 UTC920245194MatthiasMayrDepartment of Computer Science, Faculty of Engineering (LTH), Lund University, Sweden, Wallenberg AI, Autonomous Systems and Software Program (WASP), Sweden0000-0002-8198-3154JulianM.Salt-DucajuWallenberg AI, Autonomous Systems and Software Program (WASP), Sweden, Department of Automatic Control, Faculty of Engineering (LTH), Lund University, Sweden0000-0001-5256-824510.21105/joss.05194https://doi.org/10.5281/zenodo.10513691C++, Chttps://joss.theoj.org/papers/10.21105/joss.05194.pdfROS, Compliant Control, Cartesian Impedance Controllertag:joss.theoj.org,2005:Paper/45442024-01-19T09:43:47Z2024-01-21T09:05:49ZPATATO: a Python photoacoustic tomography analysis toolkitacceptedv0.5.02023-06-14 09:14:00 UTC932024-01-19 09:43:47 UTC920245686ThomasR.ElseCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-2652-4190JanekGröhlCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-5332-4856LinaHackerCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom, Department of Oncology, University of Oxford, United Kingdom0000-0001-5160-0952SarahE.BohndiekCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0003-0371-863510.21105/joss.05686https://doi.org/10.5281/zenodo.10255220Python, C++, Cuda, Chttps://joss.theoj.org/papers/10.21105/joss.05686.pdfPhotoacoustics, Imaging, Optoacoustics, MSOT, Reconstruction, Backprojection, Unmixingtag:joss.theoj.org,2005:Paper/47122024-01-03T15:30:53Z2024-01-04T00:00:32ZGibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rustaccepted0.1.22023-08-21 04:54:16 UTC932024-01-03 15:30:53 UTC920245988GuilhermeP.CastelaoScripps Institution of Oceanography0000-0002-6765-0708LuizIrberUC Davis0000-0003-4371-965910.21105/joss.05988https://doi.org/10.5281/zenodo.10422483C, Rust, MATLAB, Nixhttps://joss.theoj.org/papers/10.21105/joss.05988.pdfoceanographytag:joss.theoj.org,2005:Paper/49122023-12-18T16:42:37Z2023-12-19T00:00:28ZlibEnsemble: A complete Python toolkit for dynamic ensembles of calculationsacceptedv1.0.02023-11-01 13:13:50 UTC922023-12-18 16:42:37 UTC820236031StephenHudsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-7500-6138JeffreyLarsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0001-9924-2082John-LukeNavarroMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-9916-9038StefanM.WildAMCR Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, Industrial Engineering and Management Sciences, Northwestern University, Evanston, IL, USA0000-0002-6099-277210.21105/joss.06031https://doi.org/10.5281/zenodo.10391387Python, MATLAB, Perl, Chttps://joss.theoj.org/papers/10.21105/joss.06031.pdfensemble workflows, optimization and learningtag:joss.theoj.org,2005:Paper/38002023-12-12T19:13:40Z2023-12-13T19:41:22Zlibcdict: fast dictionaries in CacceptedV1.302022-08-05 09:02:45 UTC922023-12-12 19:13:40 UTC820234756RobertG.IzzardDepartment of Physics, School of Mathematics and Physics, University of Surrey, Guildford, GU2 7XH, Surrey, UK0000-0003-0378-4843DavidD.HendriksDepartment of Physics, School of Mathematics and Physics, University of Surrey, Guildford, GU2 7XH, Surrey, UK0000-0002-8717-6046DanielP.NemergutDepartment of Physics, School of Mathematics and Physics, University of Surrey, Guildford, GU2 7XH, Surrey, UK0009-0001-5004-751510.21105/joss.04756https://doi.org/10.5281/zenodo.10287855Meson, Perl, Chttps://joss.theoj.org/papers/10.21105/joss.04756.pdfAstronomy, Associated arrays, Dictionaries