tag:joss.theoj.org,2005:/papers/in/C++?page=4Journal of Open Source Software2023-09-14T03:02:07ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44832023-09-14T03:02:07Z2023-09-22T03:40:20ZMLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPSacceptedv1.0.02023-05-12 19:56:27 UTC892023-09-14 03:02:07 UTC820235620PaulJ.AtzbergerPaul J. Atzberger, Professor, University of California Santa Barbara0000-0001-6806-806910.21105/joss.05620https://doi.org/10.5281/zenodo.8327516Python, C++https://joss.theoj.org/papers/10.21105/joss.05620.pdfmachine learning, dynamicstag:joss.theoj.org,2005:Paper/38362023-09-13T07:59:06Z2023-09-14T00:01:31ZAPGG - A Modular C++ Framework for Asymmetric Public Goods Gamesacceptedv1.1.02022-08-25 15:20:18 UTC892023-09-13 07:59:06 UTC820234944MirkoRosenthalKempten University of Applied Sciences, GermanyDavidJ.RichterKempten University of Applied Sciences, Germany, Purdue University Northwest, USA, Chonnam National University, South Korea0000-0001-5413-6710FalkHübnerKempten University of Applied Sciences, GermanyJochenStaudacherKempten University of Applied Sciences, Germany0000-0002-0619-4606ArendHintzeMicroData Analytics, Dalarna University, Sweden, BEACON Center for the Study of Evolution in Action, Michigan State University, USA0000-0002-4872-196110.21105/joss.04944https://doi.org/10.5281/zenodo.8334926C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04944.pdfPublic Goods Games, Framework, Open Source, Asymmetric Public Goods Games, Evolutionary Algorithmstag:joss.theoj.org,2005:Paper/42852023-09-07T10:30:17Z2023-09-10T07:40:19ZREvoSim v3: A fast evolutionary simulation tool with ecological processesacceptedv3.0.02023-03-07 14:44:57 UTC892023-09-07 10:30:17 UTC820235284EuanN.FurnessDepartment of Earth Sciences and Engineering, Imperial College London, United Kingdom, Grantham Institute, Imperial College London, United Kingdom0000-0001-7917-2304RussellJ.GarwoodDepartment of Earth and Environmental Sciences, University of Manchester, United Kingdom, Natural History Museum, London, United Kingdom0000-0002-2803-9471MarkD.SuttonDepartment of Earth Sciences and Engineering, Imperial College London, United Kingdom0000-0002-7137-757210.21105/joss.05284https://doi.org/10.5281/zenodo.8228938Inno Setup, QMake, C++https://joss.theoj.org/papers/10.21105/joss.05284.pdfevolution, ecology, palaeontology, simulationtag:joss.theoj.org,2005:Paper/41862023-08-23T22:29:41Z2023-08-24T00:01:18Zctbench - compile-time benchmarking and analysisaccepted1.2.12023-02-01 11:07:45 UTC882023-08-23 22:29:41 UTC820235165JulesPenuchotUniversité Paris-Saclay, CNRS, Laboratoire Interdisciplinaire des Sciences du Numérique, 91400, Orsay, France0000-0002-6377-6880JoelFalcouUniversité Paris-Saclay, CNRS, Laboratoire Interdisciplinaire des Sciences du Numérique, 91400, Orsay, France0000-0001-5380-737510.21105/joss.05165https://doi.org/10.5281/zenodo.8270239C++https://joss.theoj.org/papers/10.21105/joss.05165.pdfmetaprogramming, compilation, benchmarking, librarytag:joss.theoj.org,2005:Paper/44862023-08-12T20:00:20Z2023-08-13T00:01:13ZPyPO: a Python package for Physical Opticsacceptedv1.0.02023-05-16 21:39:31 UTC882023-08-12 20:00:20 UTC820235478ArendMoermanFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0002-0475-6134MaikelH.GafajiThe Hague University of Applied Sciences, Johanna Westerdijkplein 75, 2521 EN, The Hague, The NetherlandsKenichiKaratsuFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands, SRON—Netherlands Institute for Space Research, Niels Bohrweg 4, 2333 CA, Leiden, The Netherlands0000-0003-4562-5584AkiraEndoFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0003-0379-234110.21105/joss.05478https://doi.org/10.5281/zenodo.8241427Python, C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.05478.pdfPhysical Optics, Geometrical Optics, Reflectors, CUDAtag:joss.theoj.org,2005:Paper/43862023-08-10T20:44:28Z2023-08-14T09:04:08ZGMP-Featurizer: A parallelized Python package for efficiently computing the Gaussian Multipole features of atomic systemsacceptedv1.0.02023-04-04 20:31:28 UTC882023-08-10 20:44:28 UTC820235476XiangyunLeiToyota Research Institute, Los Altos, CA, United States of America0000-0002-2333-9205JosephMontoyaToyota Research Institute, Los Altos, CA, United States of America0000-0001-5760-286010.21105/joss.05476https://doi.org/10.5281/zenodo.8170029Python, C++, Chttps://joss.theoj.org/papers/10.21105/joss.05476.pdfParallelization, Machine Learning, Chemistry, Molecular Dynamicstag:joss.theoj.org,2005:Paper/40162023-08-07T16:27:48Z2023-08-08T00:01:14ZSubZero: a discrete element sea ice model that simulates floes as evolving concave polygonsacceptedv1.0.22022-11-19 21:21:08 UTC882023-08-07 16:27:48 UTC820235039BrandonP.MontemuroSchool of Oceanography, University of Washington, Seattle, WA, USA0000-0003-1946-4916GeorgyE.ManucharyanSchool of Oceanography, University of Washington, Seattle, WA, USA0000-0001-7959-267510.21105/joss.05039https://doi.org/10.5281/zenodo.8205778MATLAB, C++, C#https://joss.theoj.org/papers/10.21105/joss.05039.pdfSea Ice Modeling, Collisions, Fractures, Deformation, Discrete Element Methods, Deformable Polygonal Elements, Floe Size Distribution, Ice Thickness Distributiontag:joss.theoj.org,2005:Paper/38282023-07-26T13:30:49Z2023-07-27T00:01:46ZAmpTorch: A Python package for scalable fingerprint-based neural network training on multi-element systems with integrated uncertainty quantificationacceptedv0.12022-08-22 16:32:43 UTC872023-07-26 13:30:49 UTC820235035MuhammedShuaibiDepartment of Chemical Engineering, Carnegie Mellon University, United StatesYugeHuDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United States0000-0003-3648-7749XiangyunLeiDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesBenjaminM.ComerDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesMattAdamsDepartment of Chemical Engineering, Carnegie Mellon University, United StatesJacobParasSchool of Physics and School of Computer Science, Georgia Institute of Technology, United StatesRuiQiChenDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesEricMusaDepartment of Chemical Engineering, University of Michigan, United StatesJosephMusielewiczDepartment of Chemical Engineering, Carnegie Mellon University, United StatesAndrewA.PetersonSchool of Engineering, Brown University, United States0000-0003-2855-9482AndrewJ.MedfordDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United States0000-0001-8311-9581ZacharyUlissiDepartment of Chemical Engineering, Carnegie Mellon University, United States0000-0002-9401-491810.21105/joss.05035https://doi.org/10.5281/zenodo.8151492Python, C++, C, G-code, GAPhttps://joss.theoj.org/papers/10.21105/joss.05035.pdfmachine learning interatomic potentials, neural networks, molecular dynamicstag:joss.theoj.org,2005:Paper/41062023-07-15T20:38:04Z2023-07-17T14:50:26ZQuaCa: an open-source library for fast calculations of steady-state quantum frictionacceptedv1.0.02022-12-27 19:34:03 UTC872023-07-15 20:38:04 UTC820235160MartyOelschlägerMax-Born-Institut, 12489 Berlin, Germany, dida Datenschmiede GmbH, Hauptstraße 8, 10827 Berlin, Germany, Humboldt-Universität zu Berlin, Institut für Physik, 12489 Berlin, Germany0000-0002-0120-9733SimonHermannHumboldt-Universität zu Berlin, Institut für Physik, 12489 Berlin, GermanyChristophH.EgerlandHumboldt-Universität zu Berlin, Institut für Physik, 12489 Berlin, Germany0000-0002-1099-6433DanielReicheHumboldt-Universität zu Berlin, Institut für Physik, 12489 Berlin, Germany0000-0002-6788-979410.21105/joss.05160https://doi.org/10.5281/zenodo.8101845C++, Chttps://joss.theoj.org/papers/10.21105/joss.05160.pdffluctuation-induced phenomena, atom-surface interaction, quantum friction, Casimir frictiontag:joss.theoj.org,2005:Paper/43952023-07-06T12:21:33Z2023-07-07T00:01:19ZEDP: a program for projecting electron densities from VASP onto planesacceptedv2.0.02023-04-12 12:37:00 UTC872023-07-06 12:21:33 UTC820235417I.a.w.FilotInorganic Materials and Catalysis, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology0000-0003-1403-837910.21105/joss.05417https://doi.org/10.5281/zenodo.8104498Python, C++https://joss.theoj.org/papers/10.21105/joss.05417.pdfElectron density, Charge density, VASP, Projection