tag:joss.theoj.org,2005:/papers/edited_by/@will-rowe?page=2Journal of Open Source Software2020-02-19T16:56:09ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/13942020-02-19T16:56:09Z2021-02-15T11:31:17ZWordTokenizers.jl: Basic tools for tokenizing natural language in Juliaaccepted v0.5.32019-12-07 22:05:36 UTC462020-02-19 16:56:09 UTC520201956AyushKaushalIndian Institute of Technology, Kharagpur0000-0002-6703-0728LyndonWhiteThe University of Western Australia0000-0003-1386-1646MikeInnesJulia Computing0000-0003-0788-0242RohitKumarABV-Indian Institute of Information Technology and Management Gwalior0000-0002-6758-835010.21105/joss.01956https://doi.org/10.5281/zenodo.3663390Juliahttps://joss.theoj.org/papers/10.21105/joss.01956.pdfjulialang, natural language processing (NLP), tokenization, text mining, information retrievaltag:joss.theoj.org,2005:Paper/14152020-02-04T14:47:33Z2021-02-15T11:31:13ZReferenceSeeker: rapid determination of appropriate reference genomesacceptedv1.42019-12-19 18:33:52 UTC462020-02-04 14:47:33 UTC520201994OliverSchwengersBioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, 35392, Germany, Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, 35392, Germany, German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany0000-0003-4216-2721TorstenHainInstitute of Medical Microbiology, Justus Liebig University Giessen, Giessen, 35392, Germany, German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, GermanyTrinadChakrabortyInstitute of Medical Microbiology, Justus Liebig University Giessen, Giessen, 35392, Germany, German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, GermanyAlexanderGoesmannBioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, 35392, Germany, German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany0000-0002-7086-256810.21105/joss.01994https://doi.org/10.5281/zenodo.3635630Pythonhttps://joss.theoj.org/papers/10.21105/joss.01994.pdfBioinformatics, WGS, NGS, Microbiologytag:joss.theoj.org,2005:Paper/13402019-12-11T23:26:26Z2021-02-15T11:31:21Zalignparse: A Python package for parsing complex features from high-throughput long-read sequencingaccepted0.1.02019-11-19 23:52:10 UTC442019-12-11 23:26:26 UTC420191915KatharineH.d.CrawfordBasic Sciences and Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA, Department of Genome Sciences and Medical Scientist Training Program, University of Washington, Seattle, Washington, USA0000-0002-6223-4019JesseD.BloomBasic Sciences and Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA, Howard Hughes Medical Institute, Seattle, Washington, USA0000-0003-1267-340810.21105/joss.01915https://doi.org/10.5281/zenodo.3569587Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01915.pdfPacBio, deep mutational scanning, single-cell virus sequencing, genomics, sequencingtag:joss.theoj.org,2005:Paper/12982019-11-22T22:00:17Z2021-02-15T11:31:29ZBioSimSpace: An interoperable Python framework for biomolecular simulationaccepted2019.2.02019-10-21 14:47:05 UTC432019-11-22 22:00:17 UTC420191831LesterO.HedgesAdvanced Computing Research Centre, University of Bristol, UK0000-0002-5624-0500AntoniaS.j.s.MeyEaStCHEM School of Chemistry, University of Edinburgh, UK0000-0001-7512-5252CharlesA.LaughtonSchool of Pharmacy, University of Nottingham, UK0000-0003-4090-3960FrancescoL.GervasioDepartment of Chemistry and Institute of Structural and Molecular Biology, University College London, UK0000-0003-4831-5039AdrianJ.MulhollandCentre for Computational Chemistry, School of Chemistry, University of Bristol, UK0000-0003-1015-4567ChristopherJ.WoodsAdvanced Computing Research Centre, University of Bristol, UK0000-0001-6563-9903JulienMichelEaStCHEM School of Chemistry, University of Edinburgh, UK0000-0003-0360-176010.21105/joss.01831https://doi.org/10.5281/zenodo.3551030Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01831.pdfbiomolecular-simulation, computational-chemistry, computational-physics, computational-biology, interoperability, molecular dynamics, reproducibility